Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.7e-76 288.1 143 100.0
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.8e-44 182.2 128 72.7
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.0e-33 144.8 119 63.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 6.6e-33 144.4 120 58.3
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.6e-33 144.1 115 63.5
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.2e-31 140.2 122 57.4
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.1e-31 139.4 115 60.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-31 139.4 115 60.0
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.6e-31 138.7 134 53.7
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 6.1e-31 137.9 116 59.5
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 8.0e-31 137.5 116 58.6
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.0e-30 137.1 116 58.6
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-30 136.7 116 58.6
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.4e-30 136.7 113 62.8
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.8e-30 136.3 116 57.8
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.8e-30 136.3 113 61.1
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.3e-30 136.0 113 60.2
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.3e-30 136.0 115 59.1
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 2.3e-30 136.0 115 59.1
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 3.0e-30 135.6 115 58.3
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 8.9e-30 134.0 115 56.5
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 8.9e-30 134.0 116 56.0
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 8.9e-30 134.0 115 57.4
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-29 133.7 115 57.4
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.2e-29 133.7 115 57.4
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.2e-29 133.7 114 61.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-29 133.3 115 61.7
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.5e-29 133.3 115 57.4
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 7.5e-29 131.0 115 56.5
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-28 130.2 114 58.8
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.7e-28 129.8 114 61.4
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 8.3e-28 127.5 104 61.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 8.3e-28 127.5 104 61.5
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-27 126.3 113 57.5
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.1e-27 125.2 116 58.6
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.3e-25 119.4 114 55.3
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.8e-23 112.5 114 50.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.0e-23 110.9 115 52.2
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-22 109.8 166 41.0
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 4.0e-22 108.6 113 51.3
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 6.8e-22 107.8 114 50.9
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.6e-21 105.9 117 44.4
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.7e-20 103.2 118 42.4
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.4e-20 101.3 117 44.4
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-19 100.5 117 44.4
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.1e-19 100.5 117 42.7
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.1e-19 100.5 142 40.1
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.4e-19 100.1 117 43.6
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.4e-19 100.1 117 42.7
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.4e-19 100.1 117 44.4
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.4e-19 99.4 117 42.7
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.4e-19 99.4 116 42.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.2e-19 99.0 117 43.6
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 4.1e-19 98.6 117 43.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.4e-19 98.2 117 42.7
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.0e-19 97.8 117 42.7
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.0e-19 97.8 117 42.7
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.0e-19 97.8 117 42.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.2e-19 97.4 64 75.0
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 9.2e-19 97.4 117 41.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-18 97.1 119 47.1
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.6e-18 96.7 141 38.3
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.1e-18 96.3 140 35.7
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.7e-18 95.9 142 39.4
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 3.5e-18 95.5 117 41.0
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 3.5e-18 95.5 117 41.0
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 3.5e-18 95.5 118 40.7
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 3.5e-18 95.5 118 41.5
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.5e-18 95.5 117 41.0
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 4.6e-18 95.1 119 42.0
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 4.6e-18 95.1 117 39.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.0e-18 94.7 117 41.0
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 6.0e-18 94.7 117 41.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 6.0e-18 94.7 117 41.9
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 6.0e-18 94.7 116 41.4
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 6.0e-18 94.7 118 41.5
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 7.8e-18 94.4 120 41.7
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.0e-17 94.0 132 37.9
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.0e-17 94.0 118 41.5
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.0e-17 94.0 118 41.5
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.0e-17 94.0 118 41.5
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-17 93.6 111 48.6
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.7e-17 93.2 117 41.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.3e-17 92.8 117 40.2
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 3.0e-17 92.4 117 40.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 3.9e-17 92.0 117 41.9
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 3.9e-17 92.0 116 40.5
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.9e-17 92.0 116 40.5
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.0e-17 91.7 118 40.7
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 5.0e-17 91.7 117 41.0
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 5.0e-17 91.7 140 39.3
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 6.6e-17 91.3 116 41.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 6.6e-17 91.3 117 38.5
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.6e-17 90.9 117 41.0
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 8.6e-17 90.9 117 39.3
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 8.6e-17 90.9 117 39.3
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.1e-16 90.5 72 61.1
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.1e-16 90.5 117 39.3
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.5e-16 90.1 116 39.7
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.5e-16 90.1 118 41.5
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.5e-16 89.4 117 37.6
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.5e-16 89.4 115 40.9
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.3e-16 89.0 119 41.2
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 4.3e-16 88.6 144 37.5
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 4.3e-16 88.6 116 38.8
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 5.6e-16 88.2 129 38.8
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 5.6e-16 88.2 117 39.3
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.3e-16 87.8 110 46.4
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 7.3e-16 87.8 116 38.8
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 9.5e-16 87.4 116 38.8
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.2e-15 87.0 117 38.5
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.2e-15 87.0 117 38.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.2e-15 87.0 117 36.8
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.1e-15 86.3 117 38.5
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-14 84.0 116 37.9
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.1e-14 84.0 85 47.1
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.4e-14 83.6 115 47.8
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 2.3e-14 82.8 112 38.4
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.3e-14 82.8 117 35.9
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 4.0e-14 82.0 114 37.7
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 6.8e-14 81.3 83 55.4
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.5e-13 80.1 140 37.1
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.5e-13 80.1 115 38.3
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 9.9e-13 77.4 110 45.5
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.3e-12 77.0 150 33.3
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.7e-12 76.6 65 53.8
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 6.4e-12 74.7 115 36.5
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.4e-11 73.6 65 56.9
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 2.4e-11 72.8 92 48.9
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 3.2e-11 72.4 117 34.2
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 4.1e-11 72.0 91 40.7
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 7.1e-11 71.2 112 34.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 9.2e-11 70.9 53 62.3
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 9.2e-11 70.9 160 33.8
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 2.1e-10 69.7 79 45.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 2.7e-10 69.3 83 37.3
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 6.0e-10 68.2 72 44.4
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.7e-09 66.6 44 70.5
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-08 63.5 74 47.3
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 4.7e-07 58.5 73 38.4
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 6.8e-06 54.7 69 40.6


User provided reference genes

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