Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.3e-117 426.4 214 100.0
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.7e-114 416.0 210 98.6
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 4.0e-111 404.8 210 95.2
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 1.9e-105 386.0 208 92.3
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.9e-105 386.0 210 91.4
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 4.3e-105 384.8 210 89.5
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 9.0e-103 377.1 212 91.0
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 9.3e-100 367.1 210 86.7
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 3.7e-96 355.1 207 86.0
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.0e-94 349.4 207 85.5
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 4.2e-92 341.7 207 84.1
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.2e-91 340.1 207 84.1
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 1.8e-90 336.3 210 79.0
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.3e-85 320.1 207 81.2
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 8.5e-77 290.8 195 73.8
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.4e-74 283.5 194 69.6
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.8e-74 283.1 189 74.1
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.3e-74 282.7 207 69.1
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.3e-72 276.9 192 71.9
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.7e-72 276.6 192 70.8
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-72 276.2 189 72.0
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.2e-72 276.2 198 71.7
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.7e-72 275.4 198 71.2
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 3.7e-72 275.4 209 66.5
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 4.8e-72 275.0 191 71.7
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 8.2e-72 274.2 188 70.7
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.8e-71 273.1 188 71.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.1e-71 272.3 189 71.4
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.1e-71 271.9 198 70.7
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 7.0e-71 271.2 193 68.4
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.2e-70 270.4 189 70.9
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.2e-70 270.4 189 70.9
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 2.6e-70 269.2 192 67.2
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 3.5e-70 268.9 199 68.8
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 4.5e-70 268.5 196 68.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.0e-69 267.3 200 70.0
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-69 266.2 189 69.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.9e-69 265.8 186 71.5
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 3.8e-69 265.4 188 70.7
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 5.0e-69 265.0 194 65.5
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 5.0e-69 265.0 209 67.0
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 5.0e-69 265.0 200 64.5
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 6.5e-69 264.6 203 64.5
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.1e-68 263.8 188 68.1
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 4.2e-68 261.9 187 65.8
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 7.2e-68 261.2 201 66.2
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 9.4e-68 260.8 186 68.3
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 2.7e-67 259.2 198 66.2
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 4.7e-67 258.5 188 66.5
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 8.0e-67 257.7 190 67.4
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.8e-66 256.5 189 66.7
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 2.3e-66 256.1 190 67.9
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.3e-66 256.1 190 64.2
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 3.0e-66 255.8 188 68.6
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 8.8e-66 254.2 189 65.6
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.6e-65 252.7 186 64.5
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 7.5e-65 251.1 191 62.8
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.7e-64 250.0 188 67.0
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 6.3e-64 248.1 188 65.4
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 6.3e-64 248.1 186 65.6
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 8.2e-64 247.7 207 63.8
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.4e-63 246.9 186 65.6
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 3.1e-63 245.7 186 65.1
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 5.3e-63 245.0 197 65.0
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 7.0e-63 244.6 187 64.2
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.2e-62 243.8 187 64.7
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 2.0e-62 243.0 189 65.6
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 5.9e-62 241.5 193 62.2
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.0e-61 240.7 186 64.0
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 1.0e-61 240.7 190 62.1
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.9e-61 239.2 198 62.6
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 5.0e-61 238.4 190 62.1
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 5.0e-61 238.4 188 61.7
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 6.5e-61 238.0 193 61.7
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 8.5e-61 237.7 190 62.1
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.1e-60 237.3 193 60.6
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.5e-60 236.9 186 60.2
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 9.4e-60 234.2 192 62.5
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.7e-59 232.6 186 64.0
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 3.6e-59 232.3 186 64.5
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 3.6e-59 232.3 185 62.2
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 8.0e-59 231.1 190 62.6
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 8.0e-59 231.1 190 60.5
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.0e-58 230.7 184 62.5
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.8e-58 229.9 196 60.7
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 6.8e-58 228.0 199 57.8
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 2.0e-57 226.5 199 58.8
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 2.6e-57 226.1 189 61.9
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.4e-57 225.7 194 59.8
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.7e-57 224.9 185 61.6
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.3e-56 223.8 198 58.1
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.2e-56 223.0 185 61.6
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 3.7e-56 222.2 196 56.6
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 3.7e-56 222.2 193 59.1
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 3.7e-56 222.2 187 62.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 4.8e-56 221.9 199 57.3
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 6.3e-56 221.5 191 58.1
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.8e-55 219.9 190 60.5
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 4.1e-55 218.8 191 60.7
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.2e-54 217.2 187 58.3
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.2e-54 217.2 203 55.2
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.2e-54 217.2 209 56.0
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 3.5e-54 215.7 191 59.2
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.0e-53 214.2 220 51.8
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.0e-53 214.2 199 56.3
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.3e-53 213.8 189 55.0
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 4.2e-52 208.8 188 55.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.0e-49 199.9 194 52.1
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 5.7e-49 198.4 186 55.4
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 9.2e-47 191.0 186 51.1
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.0e-45 187.6 194 52.1
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.0e-45 185.3 185 54.1
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 5.6e-44 181.8 203 49.3
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.2e-41 174.1 188 46.3
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 2.9e-40 169.5 187 44.9
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 2.4e-39 166.4 190 46.8
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 3.5e-38 162.5 211 45.0
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 3.0e-37 159.5 176 50.0
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 3.9e-37 159.1 126 63.5
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 1.1e-36 157.5 199 44.7
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.5e-36 157.1 198 42.4
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 3.6e-35 152.5 126 62.7
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 3.1e-34 149.4 187 47.1
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 1.7e-32 143.7 198 42.9
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 2.1e-22 110.2 67 82.1
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 7.8e-22 108.2 67 80.6
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.9e-20 103.6 86 62.8
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.8e-19 99.8 170 40.6
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.2e-15 86.3 77 62.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 7.8e-14 81.6 102 45.1
BcaB01g04637 Brassica carinata HOM05D005476 ORTHO05D021669 1.0e-13 81.3 54 79.6
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.3e-13 80.9 59 61.0
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 6.2e-11 72.0 100 39.0
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.4e-10 70.1 45 75.6
BcaB07g33003 Brassica carinata HOM05D005476 ORTHO05D093578 6.9e-10 68.6 48 72.9
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 4.9e-08 62.4 45 71.1
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-06 57.8 46 56.5


User provided reference genes

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