Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 1.4e-233 812.8 457 100.0
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 2.8e-210 735.3 457 88.0
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 2.3e-204 715.7 457 85.6
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 7.3e-203 710.7 457 85.3
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 1.1e-190 670.2 457 81.0
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 1.1e-185 653.7 459 80.6
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 1.4e-185 653.3 457 78.8
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 3.5e-181 638.6 457 77.7
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 1.0e-180 637.1 484 75.6
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.3e-180 636.7 457 79.0
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 3.0e-180 635.6 457 77.9
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 5.3e-177 624.8 457 76.4
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 2.3e-164 582.8 457 72.4
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 1.4e-156 557.0 473 67.9
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 8.2e-154 547.7 457 72.0
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 3.8e-151 538.9 467 69.4
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 5.2e-140 501.9 466 63.1
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 1.3e-114 417.5 468 52.6
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 1.6e-109 400.6 438 52.7
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.4e-108 397.5 468 50.2
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 1.2e-107 394.4 469 49.7
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 4.4e-107 392.5 467 50.5
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 9.9e-107 391.3 466 50.6
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 1.1e-105 387.9 458 48.9
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.4e-105 387.5 469 49.0
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 1.4e-105 387.5 467 50.1
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 6.0e-104 382.1 472 51.1
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 6.6e-103 378.6 469 49.5
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 6.6e-103 378.6 466 48.7
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 1.9e-102 377.1 470 48.5
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.8e-100 370.5 467 48.0
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 5.2e-100 369.0 442 49.5
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 6.8e-100 368.6 467 47.5
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 1.5e-99 367.5 413 52.1
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 7.1e-97 358.6 419 50.4
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 9.2e-97 358.2 439 47.6
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 3.5e-96 356.3 419 50.6
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 3.5e-96 356.3 455 48.4
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 1.3e-95 354.4 455 47.9
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 5.1e-95 352.4 420 50.5
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 5.1e-95 352.4 455 48.1
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 2.5e-94 350.1 470 48.7
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 3.3e-94 349.7 467 47.5
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 1.4e-92 344.4 468 46.6
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 4.0e-92 342.8 416 48.3
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 3.4e-91 339.7 476 45.8
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 3.2e-89 333.2 468 45.5
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 9.3e-89 331.6 433 45.7
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 2.7e-88 330.1 434 45.2
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.0e-87 328.2 446 44.2
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 1.0e-87 328.2 456 44.3
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.0e-87 328.2 473 46.3
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 1.7e-87 327.4 449 45.4
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.1e-86 324.7 421 47.3
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 1.1e-86 324.7 488 43.0
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 1.9e-86 323.9 419 46.5
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 1.9e-86 323.9 425 47.5
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 2.5e-86 323.6 464 42.2
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 1.6e-85 320.9 432 44.2
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 3.6e-85 319.7 408 49.0
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 6.2e-85 318.9 466 42.9
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 2.4e-84 317.0 464 44.8
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 2.4e-84 317.0 419 46.8
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 3.1e-84 316.6 430 45.6
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 3.1e-84 316.6 415 46.0
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 6.9e-84 315.5 411 46.2
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 5.8e-83 312.4 458 42.6
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 3.8e-82 309.7 409 46.0
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 8.4e-82 308.5 435 44.4
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 5.4e-81 305.8 439 44.4
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 1.2e-80 304.7 433 43.4
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 7.9e-80 302.0 473 41.2
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 3.0e-79 300.1 439 42.4
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.6e-77 294.3 514 40.1
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 2.8e-77 293.5 426 42.7
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 3.7e-77 293.1 436 41.3
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 4.8e-77 292.7 422 43.6
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 2.4e-73 280.4 412 42.5
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 3.2e-73 280.0 417 42.2
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 9.3e-73 278.5 417 40.8
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.0e-71 275.0 333 49.8
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 2.1e-69 267.3 319 50.5
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 2.9e-66 256.9 324 48.1
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 1.6e-64 251.1 324 47.8
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 2.7e-64 250.4 465 36.8
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.5e-64 250.0 379 44.1
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 1.3e-63 248.1 423 39.5
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.5e-62 244.6 217 58.5
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 1.3e-61 241.5 567 34.7
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 7.6e-59 232.3 350 40.0
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 6.5e-58 229.2 359 43.2
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 1.4e-57 228.0 419 36.5
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 2.1e-56 224.2 341 41.3
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 4.6e-56 223.0 251 51.4
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 3.3e-54 216.9 382 38.0
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 8.2e-53 212.2 200 58.0
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 4.5e-51 206.5 312 41.3
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 7.7e-51 205.7 428 34.3
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 6.5e-42 176.0 427 34.0
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 1.4e-36 158.3 470 30.4
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 2.4e-36 157.5 409 31.3
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 5.3e-36 156.4 409 31.3
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.0e-31 142.1 100 69.0
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 8.8e-31 139.0 231 37.7
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 1.4e-28 131.7 299 32.4
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 2.4e-28 131.0 421 27.8
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 6.5e-26 122.9 438 26.9
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 6.8e-23 112.8 95 60.0
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 7.5e-22 109.4 204 39.2
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 1.6e-19 101.7 130 47.7
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.0e-18 99.0 157 49.7
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 1.7e-18 98.2 340 26.5
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 1.9e-17 94.7 167 38.3
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 8.0e-16 89.4 100 54.0
BolC3t12644H Brassica oleracea HOM05D006045 ORTHO05D007678 1.3e-10 72.0 67 70.1
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 3.3e-09 67.4 170 34.7
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 3.3e-09 67.4 264 28.8


User provided reference genes

Program Settings