Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 1.0e-293 1012.7 511 100.0
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 5.2e-274 947.2 511 93.9
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 9.8e-273 943.0 509 93.9
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 1.2e-259 899.4 511 88.3
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 5.2e-258 894.0 511 88.8
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 3.7e-256 887.9 511 88.5
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 7.1e-255 883.6 508 88.8
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 7.1e-255 883.6 486 93.2
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 7.1e-255 883.6 508 88.8
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 7.8e-254 880.2 513 88.7
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 1.3e-253 879.4 521 86.2
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 4.3e-252 874.4 508 87.6
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 5.4e-247 857.4 511 83.8
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 3.6e-243 844.7 495 85.9
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 6.2e-243 844.0 513 83.2
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 6.9e-242 840.5 511 83.0
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 3.0e-237 825.1 511 80.6
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 3.7e-219 765.0 582 69.1
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 4.8e-203 711.4 512 72.1
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 2.4e-186 656.0 516 64.7
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 3.4e-180 635.6 515 63.9
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 4.1e-178 628.6 532 61.7
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 5.4e-178 628.2 516 61.0
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 1.2e-177 627.1 514 63.2
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 1.6e-177 626.7 530 61.7
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.7e-177 625.9 518 61.2
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 2.7e-177 625.9 518 61.6
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.7e-177 625.9 518 61.2
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 7.7e-177 624.4 518 61.4
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 1.0e-176 624.0 511 62.0
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 1.7e-176 623.2 516 61.2
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 5.0e-176 621.7 516 61.6
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 5.5e-175 618.2 517 60.9
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 4.0e-173 612.1 515 60.2
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 6.8e-173 611.3 516 59.9
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 6.8e-173 611.3 514 61.9
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 8.8e-173 610.9 516 59.5
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 8.8e-173 610.9 515 61.4
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 8.8e-173 610.9 514 59.5
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 2.0e-172 609.8 514 60.5
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 2.0e-172 609.8 518 62.4
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 3.4e-172 609.0 512 58.6
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 3.4e-172 609.0 554 57.9
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 2.2e-171 606.3 512 60.2
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 4.9e-171 605.1 514 60.5
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 4.9e-171 605.1 517 59.2
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.8e-170 603.2 513 60.8
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.4e-170 602.8 515 60.8
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 1.2e-169 600.5 513 59.5
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 1.6e-169 600.1 514 58.4
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 1.6e-169 600.1 519 61.1
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 1.6e-169 600.1 514 59.7
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 1.6e-169 600.1 515 58.6
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 5.9e-169 598.2 556 55.9
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 2.9e-168 595.9 513 59.1
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 2.9e-168 595.9 518 59.1
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 5.0e-168 595.1 512 59.6
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 6.6e-168 594.7 514 58.8
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 7.3e-167 591.3 527 59.4
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 2.8e-166 589.3 514 59.9
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 1.0e-165 587.4 515 59.2
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 3.0e-165 585.9 515 58.8
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 1.2e-164 583.9 516 57.6
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 2.6e-164 582.8 520 58.5
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 3.4e-164 582.4 519 58.0
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 5.7e-164 581.6 515 58.3
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 9.8e-164 580.9 514 57.6
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 1.3e-163 580.5 520 58.3
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 8.3e-163 577.8 517 57.3
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 1.1e-162 577.4 516 57.9
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 1.8e-162 576.6 519 57.0
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 3.2e-162 575.9 516 57.9
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 4.1e-162 575.5 514 56.6
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 4.1e-162 575.5 488 60.7
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 5.0e-160 568.5 513 57.3
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 6.6e-160 568.2 507 56.8
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 1.5e-159 567.0 515 56.7
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 3.3e-159 565.8 496 56.9
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 8.0e-158 561.2 512 56.1
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 1.8e-157 560.1 565 52.4
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 6.8e-157 558.1 523 57.6
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 4.4e-156 555.4 544 55.9
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 2.4e-154 549.7 514 57.0
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 5.0e-152 542.0 467 60.0
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 3.3e-151 539.3 460 62.6
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 6.8e-149 531.6 515 53.2
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 3.7e-147 525.8 596 49.5
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 9.2e-146 521.2 431 62.2
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 4.6e-145 518.8 511 53.0
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 6.0e-145 518.5 442 61.8
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 1.9e-138 496.9 518 53.9
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 1.2e-137 494.2 542 50.0
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 5.8e-132 475.3 456 55.5
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.7e-131 473.8 512 51.8
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 2.1e-129 466.8 319 80.6
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 6.2e-126 455.3 462 53.2
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 2.6e-124 449.9 524 46.9
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 2.4e-122 443.4 473 49.7
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 4.3e-119 432.6 370 66.2
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 3.2e-114 416.4 394 56.3
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 5.5e-114 415.6 378 59.5
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 6.9e-109 398.7 527 42.7
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 9.7e-103 378.3 342 56.7
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 8.2e-102 375.2 528 42.4
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 4.3e-95 352.8 380 52.1
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 7.4e-95 352.1 196 90.8
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 8.5e-91 338.6 440 45.9
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 7.2e-90 335.5 392 48.0
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 1.5e-87 327.8 329 55.3
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 4.1e-85 319.7 461 42.7
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 2.2e-78 297.4 340 46.5
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.9e-74 284.3 248 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 4.8e-70 269.6 454 37.7
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 1.0e-64 251.9 426 39.2
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 4.1e-61 240.0 359 39.0
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 9.2e-53 212.2 535 30.8
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.2e-52 211.8 173 59.0
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 3.9e-43 180.3 135 66.7
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 2.3e-40 171.0 136 60.3
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.1e-37 160.2 122 65.6
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.1e-37 160.2 122 65.6
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 1.9e-34 151.4 495 29.1
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 9.2e-29 132.5 67 98.5
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 9.2e-29 132.5 67 98.5
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.2e-28 132.1 200 39.5
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 3.0e-27 127.5 65 89.2
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 5.8e-23 113.2 60 85.0
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 1.9e-21 108.2 116 45.7
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.9e-19 100.5 57 75.4
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.9e-18 98.2 52 82.7
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 2.1e-17 94.7 57 68.4
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 1.4e-16 92.0 216 31.9
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 9.9e-15 85.9 64 62.5
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 2.1e-09 68.2 74 50.0


User provided reference genes

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