Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 5.8e-250 867.1 430 100.0
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 1.7e-249 865.5 430 99.8
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 8.3e-249 863.2 430 99.3
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 1.9e-248 862.1 430 99.1
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 6.4e-241 837.0 433 96.8
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 3.6e-236 821.2 433 94.5
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 2.6e-234 815.1 428 94.9
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 4.4e-234 814.3 433 93.8
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 9.9e-234 813.1 433 93.8
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 2.4e-232 808.5 428 94.6
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 4.9e-225 784.3 427 90.6
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 6.7e-214 747.3 429 85.8
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.6e-212 742.7 427 84.8
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 2.1e-212 742.3 426 85.9
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.4e-211 739.6 428 84.1
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 4.0e-211 738.0 428 83.9
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 4.0e-211 738.0 428 83.9
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 5.3e-211 737.6 421 86.0
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 6.9e-211 737.3 428 84.6
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 1.2e-210 736.5 418 86.4
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 9.9e-210 733.4 424 84.9
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 1.7e-209 732.6 428 83.6
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.7e-209 732.6 421 85.7
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 2.2e-209 732.3 429 85.1
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 4.9e-209 731.1 424 84.4
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 6.4e-209 730.7 421 85.3
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 1.1e-208 729.9 418 86.1
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 1.1e-208 729.9 425 84.5
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 3.2e-208 728.4 428 83.6
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 4.2e-208 728.0 422 84.4
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 7.1e-208 727.2 422 83.4
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 9.3e-208 726.9 423 84.2
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 9.3e-208 726.9 427 83.8
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 1.6e-207 726.1 425 83.3
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 2.7e-207 725.3 421 84.3
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 6.0e-207 724.2 428 81.8
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 7.9e-207 723.8 422 83.4
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 7.9e-207 723.8 423 83.5
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 3.9e-206 721.5 423 83.5
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 5.1e-206 721.1 426 82.4
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 6.7e-206 720.7 427 82.9
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 6.7e-206 720.7 428 81.8
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 8.7e-206 720.3 425 83.1
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.1e-205 719.9 428 82.2
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 1.9e-205 719.2 428 81.3
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 4.3e-205 718.0 428 80.8
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 4.3e-205 718.0 427 81.7
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 5.6e-205 717.6 424 83.3
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 7.4e-205 717.2 422 82.5
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 7.4e-205 717.2 423 82.7
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 1.3e-204 716.5 425 82.1
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 2.1e-204 715.7 424 82.1
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 3.7e-204 714.9 413 85.2
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.1e-203 713.4 424 82.1
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 1.1e-203 713.4 427 82.4
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.8e-203 712.6 428 80.8
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 1.8e-203 712.6 457 79.0
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 5.3e-203 711.1 423 81.8
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 5.3e-203 711.1 427 81.3
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 6.9e-203 710.7 413 84.3
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 9.0e-203 710.3 428 82.5
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 1.5e-202 709.5 418 82.3
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 3.4e-202 708.4 362 98.3
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 1.0e-201 706.8 429 81.4
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 2.9e-201 705.3 422 81.5
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 3.8e-201 704.9 429 81.1
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 4.9e-201 704.5 438 81.1
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 6.5e-201 704.1 423 81.6
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 1.9e-200 702.6 424 81.6
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 2.5e-200 702.2 429 80.7
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 7.1e-200 700.7 427 79.6
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 2.1e-199 699.1 424 80.9
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 3.0e-198 695.3 426 79.1
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 8.7e-198 693.7 414 82.9
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 8.7e-198 693.7 366 95.1
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 1.9e-197 692.6 483 73.1
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 4.3e-197 691.4 421 80.0
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 8.2e-196 687.2 424 77.4
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 2.9e-193 678.7 430 78.6
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 3.8e-193 678.3 424 78.1
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 8.5e-193 677.2 424 78.8
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 2.5e-192 675.6 424 77.6
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.6e-191 672.9 506 69.6
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 3.6e-191 671.8 425 77.9
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 9.7e-189 663.7 384 85.4
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 2.2e-188 662.5 420 78.8
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 4.8e-188 661.4 421 77.9
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 6.3e-188 661.0 381 85.8
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 3.1e-187 658.7 386 83.9
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 4.1e-187 658.3 448 73.2
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 2.6e-186 655.6 392 82.4
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 2.9e-185 652.1 394 81.7
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 3.8e-185 651.7 403 77.9
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 2.5e-184 649.0 423 76.4
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 2.7e-183 645.6 423 75.4
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.1e-182 641.3 418 76.8
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.1e-182 641.3 418 76.8
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.0e-181 639.4 426 74.2
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 7.4e-181 637.5 421 74.8
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 1.2e-178 630.2 419 72.1
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 2.6e-178 629.0 422 73.7
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 9.4e-176 620.5 372 82.5
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 1.6e-175 619.8 424 71.0
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 5.2e-174 614.8 424 74.5
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 2.8e-172 609.0 379 79.4
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 6.3e-172 607.8 444 70.7
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.1e-171 605.5 421 71.3
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 1.6e-170 603.2 353 84.4
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 2.6e-170 602.4 408 73.3
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.0e-169 600.5 424 71.2
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 8.0e-167 590.9 354 81.9
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 1.3e-164 583.6 415 71.1
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 3.2e-160 568.9 406 72.4
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 2.1e-159 566.2 424 66.0
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 4.7e-159 565.1 387 73.6
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 7.7e-154 547.7 307 87.6
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 3.0e-150 535.8 282 93.6
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 4.1e-147 525.4 311 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 2.9e-140 502.7 338 74.0
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 1.3e-137 493.8 288 88.9
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 4.3e-136 488.8 289 83.7
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 8.9e-126 454.5 432 55.1
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 3.9e-121 439.1 271 84.9
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 9.9e-117 424.5 464 49.6
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 2.9e-116 422.9 450 50.0
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 6.4e-116 421.8 345 67.5
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 3.2e-115 419.5 235 86.8
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-113 414.5 270 79.3
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 2.3e-113 413.3 271 76.4
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 9.9e-109 397.9 414 50.7
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 3.8e-108 396.0 228 83.3
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 2.3e-105 386.7 270 76.3
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-104 384.4 249 77.5
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 4.3e-104 382.5 228 81.6
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 6.7e-97 358.6 467 43.9
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 9.0e-94 348.2 206 88.3
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 1.3e-89 334.3 226 74.8
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 8.7e-89 331.6 188 82.4
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.8e-87 326.6 197 82.2
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 4.8e-87 325.9 188 81.9
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 1.4e-83 314.3 213 73.2
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 8.2e-71 271.9 267 58.4
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 5.0e-68 262.7 168 75.0
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 2.2e-63 247.3 146 86.3
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 2.4e-62 243.8 144 86.8
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 6.5e-60 235.7 209 62.7
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 6.7e-57 225.7 139 77.0
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.6e-45 188.0 221 52.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 4.7e-42 176.4 109 74.3
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 3.4e-40 170.2 109 71.6
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 4.1e-38 163.3 174 55.7
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 4.6e-29 133.3 78 75.6
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 1.6e-26 124.8 136 50.7
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 1.5e-24 118.2 76 80.3
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 2.0e-24 117.9 74 70.3
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 7.5e-24 115.9 91 64.8
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 2.2e-23 114.4 95 63.2
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 2.3e-20 104.4 57 82.5
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 3.3e-19 100.5 76 56.6
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.9e-14 84.7 61 73.8
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 9.5e-11 72.4 35 88.6
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 3.4e-08 63.9 334 25.4
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 1.4e-06 58.5 310 23.9


User provided reference genes

Program Settings