Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p32320 Brassica napus HOM05D002958 ORTHO05D003558 3.8e-38 161.0 80 100.0
A10p11240 Brassica napus HOM05D002958 ORTHO05D003558 5.7e-26 120.6 70 87.1
BraA10t43217Z Brassica rapa HOM05D002958 ORTHO05D003558 5.7e-26 120.6 70 87.1
BcaC03g14381 Brassica carinata HOM05D002958 ORTHO05D003558 2.2e-25 118.6 70 85.7
C02p17920 Brassica napus HOM05D002958 ORTHO05D003558 2.2e-25 118.6 70 85.7
BolC2t07923H Brassica oleracea HOM05D002958 ORTHO05D003558 2.2e-25 118.6 70 85.7
CARHR266980 Cardamine hirsuta HOM05D002958 ORTHO05D003558 3.7e-25 117.9 70 84.3
BcaB05g22079 Brassica carinata HOM05D002958 ORTHO05D003558 4.8e-25 117.5 70 84.3
A02p10810 Brassica napus HOM05D002958 ORTHO05D003558 4.8e-25 117.5 70 84.3
BraA02t06142Z Brassica rapa HOM05D002958 ORTHO05D003558 4.8e-25 117.5 70 84.3
Thhalv10013244m.g Eutrema salsugineum HOM05D002958 ORTHO05D003558 4.8e-25 117.5 70 84.3
BcaB08g35744 Brassica carinata HOM05D002958 ORTHO05D003558 1.4e-24 115.9 70 82.9
BcaC04g20412 Brassica carinata HOM05D002958 ORTHO05D003558 1.4e-24 115.9 70 82.9
C09p43840 Brassica napus HOM05D002958 ORTHO05D003558 1.4e-24 115.9 70 82.9
BolC9t57268H Brassica oleracea HOM05D002958 ORTHO05D003558 1.4e-24 115.9 70 82.9
AL8G28910 Arabidopsis lyrata HOM05D002958 ORTHO05D003558 1.8e-24 115.5 70 82.9
Sp6g15910 Schrenkiella parvula HOM05D002958 ORTHO05D003558 1.8e-24 115.5 70 81.4
Carub.0008s1414 Capsella rubella HOM05D002958 ORTHO05D003558 4.1e-24 114.4 70 81.4
Aa31LG3G10080 Aethionema arabicum HOM05D002958 ORTHO05D003558 2.6e-23 111.7 70 78.6
AT5G53850 Arabidopsis thaliana HOM05D002958 ORTHO05D003558 1.0e-22 109.8 70 78.6
THA.LOC104799927 Tarenaya hassleriana HOM05D002958 ORTHO05D003558 2.9e-22 108.2 70 75.7
Oeu024907.2 Olea europaea HOM05D002958 ORTHO05D003558 1.9e-21 105.5 70 75.7
Psat5g242200 Pisum sativum HOM05D002958 ORTHO05D003558 7.2e-21 103.6 70 72.9
Peaxi162Scf00069g01630 Petunia axillaris HOM05D002958 ORTHO05D003558 9.4e-21 103.2 78 66.7
MSTRG.15237 Avicennia marina HOM05D002958 ORTHO05D003558 2.1e-20 102.1 78 65.4
Migut.M00798 Erythranthe guttata HOM05D002958 ORTHO05D003558 2.7e-20 101.7 70 70.0
Duzib213G1007 Durio zibethinus HOM05D002958 ORTHO05D003558 4.7e-20 100.9 70 67.1
arahy.Tifrunner.gnm1.ann1.CK6KU2 Arachis hypogaea HOM05D002958 ORTHO05D003558 6.1e-20 100.5 70 70.0
arahy.Tifrunner.gnm1.ann1.VQ4NRX Arachis hypogaea HOM05D002958 ORTHO05D003558 6.1e-20 100.5 70 70.0
Ca_03507_v3 Cicer arietinum L. HOM05D002958 ORTHO05D003558 6.1e-20 100.5 70 71.4
Sc16g0007030 Simmondsia chinensis HOM05D002958 ORTHO05D003558 6.1e-20 100.5 70 68.6
Solyc07g063040.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 6.1e-20 100.5 70 70.0
Sopen07g031230 Solanum pennellii HOM05D002958 ORTHO05D003558 6.1e-20 100.5 70 70.0
Cfa020573 Carpinus fangiana HOM05D002958 ORTHO05D003558 7.9e-20 100.1 70 68.6
Actinidia09690 Actinidia chinensis HOM05D002958 ORTHO05D003558 1.0e-19 99.8 70 70.0
Ah.04g164780 Amaranthus hybridus HOM05D002958 ORTHO05D003558 1.0e-19 99.8 70 67.1
Ciclev10007808m.g Citrus clementina HOM05D002958 ORTHO05D003558 1.0e-19 99.8 70 68.6
CAN.G162.50 Capsicum annuum HOM05D002958 ORTHO05D003558 1.8e-19 99.0 70 68.6
AUR62019437 Chenopodium quinoa HOM05D002958 ORTHO05D003558 1.8e-19 99.0 70 68.6
Cc05_g11940 Coffea canephora HOM05D002958 ORTHO05D003558 1.8e-19 99.0 70 70.0
COL.COLO4_27183 Corchorus olitorius HOM05D002958 ORTHO05D003558 1.8e-19 99.0 70 65.7
Glyma.06G240100 Glycine max HOM05D002958 ORTHO05D003558 1.8e-19 99.0 70 67.1
Haze_09438 Corylus avellana HOM05D002958 ORTHO05D003558 2.3e-19 98.6 70 67.1
Eucgr.F01149 Eucalyptus grandis HOM05D002958 ORTHO05D003558 2.3e-19 98.6 70 67.1
Gohir.A13G146200 Gossypium hirsutum HOM05D002958 ORTHO05D003558 2.3e-19 98.6 69 66.7
Lalb_Chr01g0016791 Lupinus albus HOM05D002958 ORTHO05D003558 2.3e-19 98.6 70 68.6
TWI39G0621 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 2.3e-19 98.6 70 71.4
Dinv20182 Davidia involucrata HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 67.1
Gohir.A01G063000 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 62.9
Gohir.D01G049400 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 62.9
Gorai.002G069300 Gossypium raimondii HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 62.9
Lj3g0001420 Lotus japonicus HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 68.6
Nitab4.5_0000207g0070 Nicotiana tabacum HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 67.1
Nitab4.5_0001241g0080 Nicotiana tabacum HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 65.7
Thecc.07G091600 Theobroma cacao HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 65.7
GSVIVG01014315001 Vitis vinifera HOM05D002958 ORTHO05D003558 3.0e-19 98.2 70 68.6
EL10Ac4g08198 Beta vulgaris HOM05D002958 ORTHO05D003558 3.9e-19 97.8 70 67.1
AUR62039195 Chenopodium quinoa HOM05D002958 ORTHO05D003558 3.9e-19 97.8 70 67.1
Glyma.12G225300 Glycine max HOM05D002958 ORTHO05D003558 3.9e-19 97.8 70 67.1
Gohir.D13G151100 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.9e-19 97.8 69 66.7
PSO675G8275 Papaver somniferum HOM05D002958 ORTHO05D003558 3.9e-19 97.8 70 65.7
PGSC0003DMG400012412 Solanum tuberosum HOM05D002958 ORTHO05D003558 3.9e-19 97.8 70 67.1
HanXRQChr09g0270181 Helianthus annuus HOM05D002958 ORTHO05D003558 5.1e-19 97.4 70 68.6
Nitab4.5_0001336g0100 Nicotiana tabacum HOM05D002958 ORTHO05D003558 5.1e-19 97.4 70 65.7
QL08p022191 Quercus lobata HOM05D002958 ORTHO05D003558 5.1e-19 97.4 69 65.2
Actinidia35245 Actinidia chinensis HOM05D002958 ORTHO05D003558 6.7e-19 97.1 69 65.2
CSS0039562 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 6.7e-19 97.1 70 68.6
CSS0047160 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 6.7e-19 97.1 70 68.6
CANSAT56G4387 Cannabis sativa HOM05D002958 ORTHO05D003558 6.7e-19 97.1 70 68.6
Duzib170G0760 Durio zibethinus HOM05D002958 ORTHO05D003558 6.7e-19 97.1 70 65.7
Solyc10g007050.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 6.7e-19 97.1 70 68.6
Sopen10g002950 Solanum pennellii HOM05D002958 ORTHO05D003558 6.7e-19 97.1 70 68.6
PGSC0003DMG400025041 Solanum tuberosum HOM05D002958 ORTHO05D003558 6.7e-19 97.1 70 68.6
ATR0737G076 Amborella trichopoda HOM05D002958 ORTHO05D003558 8.8e-19 96.7 70 64.3
unitig_578.g15672 Utricularia gibba HOM05D002958 ORTHO05D003558 8.8e-19 96.7 70 62.9
Dinv14925 Davidia involucrata HOM05D002958 ORTHO05D003558 1.1e-18 96.3 76 61.8
PSO541G2422 Papaver somniferum HOM05D002958 ORTHO05D003558 1.1e-18 96.3 70 64.3
VMungo1080G0087 Vigna mungo HOM05D002958 ORTHO05D003558 1.1e-18 96.3 70 65.7
Gorai.013G169100 Gossypium raimondii HOM05D002958 ORTHO05D003558 1.5e-18 95.9 69 66.7
Gorai.013G170700 Gossypium raimondii HOM05D002958 ORTHO05D003558 1.5e-18 95.9 69 66.7
MD03G1229100 Malus domestica HOM05D002958 ORTHO05D003558 1.5e-18 95.9 70 62.9
Manes.15G087800 Manihot esculenta HOM05D002958 ORTHO05D003558 1.5e-18 95.9 70 67.1
Hund02228 Selenicereus undatus HOM05D002958 ORTHO05D003558 1.5e-18 95.9 70 61.4
vmacro09527 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 1.5e-18 95.9 70 64.3
Aqoxy4G00736 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 2.0e-18 95.5 70 62.9
EL10Ac9g20906 Beta vulgaris HOM05D002958 ORTHO05D003558 2.0e-18 95.5 70 65.7
Peaxi162Scf00027g00211 Petunia axillaris HOM05D002958 ORTHO05D003558 2.0e-18 95.5 70 67.1
Rhsim06G0199700 Rhododendron simsii HOM05D002958 ORTHO05D003558 2.0e-18 95.5 70 67.1
SGA_v2.0_scaffold73G24254 Striga asiatica HOM05D002958 ORTHO05D003558 2.0e-18 95.5 70 67.1
vmacro11871 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 2.6e-18 95.1 70 65.7
Actinidia18769 Actinidia chinensis HOM05D002958 ORTHO05D003558 3.3e-18 94.7 71 66.2
Lj8C155G9 Lonicera japonica HOM05D002958 ORTHO05D003558 3.3e-18 94.7 70 68.6
Eucgr.F03307 Eucalyptus grandis HOM05D002958 ORTHO05D003558 4.4e-18 94.4 70 61.4
PGR083G2586 Punica granatum HOM05D002958 ORTHO05D003558 4.4e-18 94.4 70 62.9
TPR.G7973 Trifolium pratense HOM05D002958 ORTHO05D003558 4.4e-18 94.4 70 67.1
CiPaw.11G170500 Carya illinoinensis HOM05D002958 ORTHO05D003558 5.7e-18 94.0 70 64.3
ECA240G3077 Erigeron canadensis HOM05D002958 ORTHO05D003558 5.7e-18 94.0 69 63.8
Glyma.13G276000 Glycine max HOM05D002958 ORTHO05D003558 5.7e-18 94.0 70 64.3
Lj3g0007256 Lotus japonicus HOM05D002958 ORTHO05D003558 5.7e-18 94.0 70 64.3
Potri.001G399000 Populus trichocarpa HOM05D002958 ORTHO05D003558 5.7e-18 94.0 70 64.3
SalBow7G2893 Salvia bowleyana HOM05D002958 ORTHO05D003558 5.7e-18 94.0 70 64.3
CiPaw.12G119100 Carya illinoinensis HOM05D002958 ORTHO05D003558 7.4e-18 93.6 70 62.9
DCAR_020992 Daucus carota HOM05D002958 ORTHO05D003558 9.7e-18 93.2 70 65.7
Lsat_1_v5_gn_9_97501 Lactuca sativa HOM05D002958 ORTHO05D003558 9.7e-18 93.2 69 63.8
Prupe.4G180000 Prunus persica HOM05D002958 ORTHO05D003558 9.7e-18 93.2 70 62.9
Rhsim04G0021800 Rhododendron simsii HOM05D002958 ORTHO05D003558 9.7e-18 93.2 70 62.9
RcHm_v2.0_Chr5g0033201 Rosa chinensis HOM05D002958 ORTHO05D003558 9.7e-18 93.2 71 60.6
CSS0016776 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.3e-17 92.8 70 64.3
CSS0042025 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.3e-17 92.8 70 64.3
HanXRQChr12g0364161 Helianthus annuus HOM05D002958 ORTHO05D003558 1.3e-17 92.8 69 63.8
Medtr2g079110 Medicago truncatula HOM05D002958 ORTHO05D003558 1.3e-17 92.8 70 67.1
TAR627G0954 Trochodendron aralioides HOM05D002958 ORTHO05D003558 1.3e-17 92.8 70 64.3
ECA236G4656 Erigeron canadensis HOM05D002958 ORTHO05D003558 1.7e-17 92.4 70 58.6
Hma1.2p1_0458F.1_g157030 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 1.7e-17 92.4 70 60.0
Sabra16G0261600 Salix brachista HOM05D002958 ORTHO05D003558 1.7e-17 92.4 70 64.3
MBI06_g20686_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 2.2e-17 92.0 70 62.9
MBI06_g23079_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 2.2e-17 92.0 70 62.9
Aqoxy1G02381 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 2.8e-17 91.7 69 60.9
Os11g0484000 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 2.8e-17 91.7 70 58.6
Sabra11G0103200 Salix brachista HOM05D002958 ORTHO05D003558 2.8e-17 91.7 70 61.4
Sed0013988 Sechium edule HOM05D002958 ORTHO05D003558 2.8e-17 91.7 70 62.9
MELO3C016693.2 Cucumis melo HOM05D002958 ORTHO05D003558 4.8e-17 90.9 70 61.4
MBI07_g30198_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 4.8e-17 90.9 70 61.4
Zm00001eb169620 Zea mays HOM05D002958 ORTHO05D003558 4.8e-17 90.9 70 58.6
FvH4_3g19790 Fragaria vesca HOM05D002958 ORTHO05D003558 6.3e-17 90.5 70 58.6
FAN11G0087 Fragaria x ananassa HOM05D002958 ORTHO05D003558 6.3e-17 90.5 70 58.6
FAN16G0300 Fragaria x ananassa HOM05D002958 ORTHO05D003558 6.3e-17 90.5 70 58.6
FAN21G2785 Fragaria x ananassa HOM05D002958 ORTHO05D003558 6.3e-17 90.5 70 58.6
FAN25G2067 Fragaria x ananassa HOM05D002958 ORTHO05D003558 6.3e-17 90.5 70 58.6
Manes.03G109300 Manihot esculenta HOM05D002958 ORTHO05D003558 6.3e-17 90.5 70 62.9
ClCG11G018020 Citrullus lanatus HOM05D002958 ORTHO05D003558 8.2e-17 90.1 70 61.4
CsaV3_4G033640 Cucumis sativus L. HOM05D002958 ORTHO05D003558 8.2e-17 90.1 70 61.4
Gohir.A13G147033 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.1e-16 89.7 72 62.5
Sed0005351 Sechium edule HOM05D002958 ORTHO05D003558 1.1e-16 89.7 70 61.4
MD11G1249900 Malus domestica HOM05D002958 ORTHO05D003558 1.8e-16 89.0 70 58.6
HPP92_020260 Vanilla planifolia HOM05D002958 ORTHO05D003558 2.4e-16 88.6 70 60.0
Manes.13G144832 Manihot esculenta HOM05D002958 ORTHO05D003558 3.1e-16 88.2 70 57.1
Os01g0101200 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 3.1e-16 88.2 68 60.3
TWI14G0888 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 3.1e-16 88.2 70 64.3
GSVIVG01020566001 Vitis vinifera HOM05D002958 ORTHO05D003558 4.1e-16 87.8 70 57.1
ClCG05G009310 Citrullus lanatus HOM05D002958 ORTHO05D003558 7.0e-16 87.0 70 58.6
MELO3C019407.2 Cucumis melo HOM05D002958 ORTHO05D003558 7.0e-16 87.0 70 58.6
Cpa.g.sc80.76 Carica papaya HOM05D002958 ORTHO05D003558 9.1e-16 86.7 81 56.8
CDE02G0813 Ceratophyllum demersum HOM05D002958 ORTHO05D003558 9.1e-16 86.7 70 58.6
Lsat_1_v5_gn_7_104120 Lactuca sativa HOM05D002958 ORTHO05D003558 9.1e-16 86.7 64 64.1
Nn8g39708 Nelumbo nucifera HOM05D002958 ORTHO05D003558 1.2e-15 86.3 63 63.5
Dinv13401 Davidia involucrata HOM05D002958 ORTHO05D003558 2.0e-15 85.5 70 54.3
Cpa.g.sc83.52 Carica papaya HOM05D002958 ORTHO05D003558 3.5e-15 84.7 70 52.9
Potri.011G118132 Populus trichocarpa HOM05D002958 ORTHO05D003558 3.5e-15 84.7 70 57.1
Lalb_Chr20g0109601 Lupinus albus HOM05D002958 ORTHO05D003558 4.5e-15 84.3 67 64.2
CsaV3_3G019470 Cucumis sativus L. HOM05D002958 ORTHO05D003558 5.9e-15 84.0 70 57.1
Nitab4.5_0002383g0020 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.0e-14 83.2 70 60.0
QL08p039561 Quercus lobata HOM05D002958 ORTHO05D003558 2.2e-14 82.0 69 52.2
Haze_13197 Corylus avellana HOM05D002958 ORTHO05D003558 8.5e-14 80.1 70 54.3
Pp3c4_28740 Physcomitrium patens HOM05D002958 ORTHO05D003558 1.1e-13 79.7 70 54.3
Gohir.D13G152056 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.9e-13 79.0 69 56.5
Actinidia11087 Actinidia chinensis HOM05D002958 ORTHO05D003558 2.5e-13 78.6 70 50.0
Hma1.2p1_0002F.1_g002040 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 2.5e-13 78.6 70 54.3
Mapoly0003s0138 Marchantia polymorpha HOM05D002958 ORTHO05D003558 2.5e-13 78.6 70 50.0
Thecc.02G181900 Theobroma cacao HOM05D002958 ORTHO05D003558 3.2e-13 78.2 70 52.9
Pp3c3_4430 Physcomitrium patens HOM05D002958 ORTHO05D003558 4.2e-13 77.8 70 52.9
CSS0041223 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 2.7e-12 75.1 70 47.1
SMO146G0056 Selaginella moellendorffii HOM05D002958 ORTHO05D003558 3.6e-12 74.7 71 50.7
SMO356G0618 Selaginella moellendorffii HOM05D002958 ORTHO05D003558 3.6e-12 74.7 70 50.0
CSS0011837 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.4e-11 72.8 70 45.7
CBR_g20444 Chara braunii HOM05D002958 ORTHO05D003558 8.8e-11 70.1 71 47.9
CAN.G1119.24 Capsicum annuum HOM05D002958 ORTHO05D003558 2.6e-10 68.6 43 76.7
DCAR_013023 Daucus carota HOM05D002958 ORTHO05D014736 2.6e-10 68.6 69 44.9
DCAR_013024 Daucus carota HOM05D002958 ORTHO05D003558 2.6e-10 68.6 69 44.9
Phvul.005G072900 Phaseolus vulgaris HOM05D002958 ORTHO05D003558 3.7e-09 64.7 45 64.4
Cre01.g016528 Chlamydomonas reinhardtii HOM05D002958 ORTHO05D003558 6.3e-09 63.9 68 44.1
SEGI_10776 Sequoiadendron giganteum HOM05D002958 ORTHO05D003558 2.4e-08 62.0 47 59.6
Eucgr.F03309 Eucalyptus grandis HOM05D002958 ORTHO05D194207 5.0e-06 54.3 41 58.5


User provided reference genes

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