Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p32310 Brassica napus HOM05D002958 ORTHO05D039432 9.4e-42 172.9 78 100.0
Carub.0008s1414 Capsella rubella HOM05D002958 ORTHO05D003558 8.3e-14 80.1 37 91.9
BcaC04g20412 Brassica carinata HOM05D002958 ORTHO05D003558 7.0e-13 77.0 37 89.2
A10p11240 Brassica napus HOM05D002958 ORTHO05D003558 7.0e-13 77.0 37 89.2
C09p43840 Brassica napus HOM05D002958 ORTHO05D003558 7.0e-13 77.0 37 89.2
BolC9t57268H Brassica oleracea HOM05D002958 ORTHO05D003558 7.0e-13 77.0 37 89.2
BraA10t43217Z Brassica rapa HOM05D002958 ORTHO05D003558 7.0e-13 77.0 37 89.2
AL8G28910 Arabidopsis lyrata HOM05D002958 ORTHO05D003558 1.6e-12 75.9 37 86.5
BcaB08g35744 Brassica carinata HOM05D002958 ORTHO05D003558 1.6e-12 75.9 37 86.5
Thhalv10013244m.g Eutrema salsugineum HOM05D002958 ORTHO05D003558 1.6e-12 75.9 37 86.5
THA.LOC104799927 Tarenaya hassleriana HOM05D002958 ORTHO05D003558 3.5e-12 74.7 37 86.5
Sp6g15910 Schrenkiella parvula HOM05D002958 ORTHO05D003558 4.6e-12 74.3 37 83.8
AT5G53850 Arabidopsis thaliana HOM05D002958 ORTHO05D003558 7.8e-12 73.6 37 81.1
CARHR266980 Cardamine hirsuta HOM05D002958 ORTHO05D003558 7.8e-12 73.6 37 83.8
BcaB05g22079 Brassica carinata HOM05D002958 ORTHO05D003558 1.3e-11 72.8 37 81.1
BcaC03g14381 Brassica carinata HOM05D002958 ORTHO05D003558 1.3e-11 72.8 37 81.1
C02p17920 Brassica napus HOM05D002958 ORTHO05D003558 1.3e-11 72.8 37 81.1
BolC2t07923H Brassica oleracea HOM05D002958 ORTHO05D003558 1.3e-11 72.8 37 81.1
A02p10810 Brassica napus HOM05D002958 ORTHO05D003558 1.7e-11 72.4 37 81.1
BraA02t06142Z Brassica rapa HOM05D002958 ORTHO05D003558 1.7e-11 72.4 37 81.1
Zm00001eb127150 Zea mays HOM05D002958 ORTHO05D003558 2.3e-11 72.0 41 73.2
Aa31LG3G10080 Aethionema arabicum HOM05D002958 ORTHO05D003558 5.0e-11 70.9 37 81.1
Gohir.A01G063000 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.1e-10 69.7 37 73.0
TAR627G0954 Trochodendron aralioides HOM05D002958 ORTHO05D003558 1.1e-10 69.7 37 75.7
CiPaw.12G119100 Carya illinoinensis HOM05D002958 ORTHO05D003558 1.9e-10 68.9 37 75.7
AUR62019437 Chenopodium quinoa HOM05D002958 ORTHO05D003558 1.9e-10 68.9 37 75.7
AUR62039195 Chenopodium quinoa HOM05D002958 ORTHO05D003558 1.9e-10 68.9 37 75.7
Manes.03G109300 Manihot esculenta HOM05D002958 ORTHO05D003558 1.9e-10 68.9 37 78.4
Cpa.g.sc80.76 Carica papaya HOM05D002958 ORTHO05D003558 2.5e-10 68.6 37 78.4
Gohir.D01G049400 Gossypium hirsutum HOM05D002958 ORTHO05D003558 3.3e-10 68.2 37 70.3
Gorai.002G069300 Gossypium raimondii HOM05D002958 ORTHO05D003558 3.3e-10 68.2 37 70.3
PGR083G2586 Punica granatum HOM05D002958 ORTHO05D003558 3.3e-10 68.2 37 73.0
GSVIVG01014315001 Vitis vinifera HOM05D002958 ORTHO05D003558 4.3e-10 67.8 37 73.0
ECA236G4656 Erigeron canadensis HOM05D002958 ORTHO05D003558 5.6e-10 67.4 37 75.7
SalBow7G2893 Salvia bowleyana HOM05D002958 ORTHO05D003558 5.6e-10 67.4 37 75.7
FvH4_3g19790 Fragaria vesca HOM05D002958 ORTHO05D003558 7.3e-10 67.0 37 75.7
FAN11G0087 Fragaria x ananassa HOM05D002958 ORTHO05D003558 7.3e-10 67.0 37 75.7
FAN16G0300 Fragaria x ananassa HOM05D002958 ORTHO05D003558 7.3e-10 67.0 37 75.7
FAN21G2785 Fragaria x ananassa HOM05D002958 ORTHO05D003558 7.3e-10 67.0 37 75.7
FAN25G2067 Fragaria x ananassa HOM05D002958 ORTHO05D003558 7.3e-10 67.0 37 75.7
RcHm_v2.0_Chr5g0033201 Rosa chinensis HOM05D002958 ORTHO05D003558 7.3e-10 67.0 37 75.7
Ciclev10009308m.g Citrus clementina HOM05D002958 ORTHO05D003558 9.5e-10 66.6 38 71.1
CsaV3_3G019470 Cucumis sativus L. HOM05D002958 ORTHO05D003558 9.5e-10 66.6 37 70.3
Glyma.06G240100 Glycine max HOM05D002958 ORTHO05D003558 9.5e-10 66.6 37 70.3
Gohir.A13G146200 Gossypium hirsutum HOM05D002958 ORTHO05D003558 9.5e-10 66.6 37 73.0
Gohir.D13G151100 Gossypium hirsutum HOM05D002958 ORTHO05D003558 9.5e-10 66.6 37 73.0
Gorai.013G169100 Gossypium raimondii HOM05D002958 ORTHO05D003558 9.5e-10 66.6 37 73.0
Gorai.013G170700 Gossypium raimondii HOM05D002958 ORTHO05D003558 9.5e-10 66.6 37 73.0
Phvul.005G072900 Phaseolus vulgaris HOM05D002958 ORTHO05D003558 9.5e-10 66.6 37 67.6
COL.COLO4_27183 Corchorus olitorius HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 70.3
Duzib213G1007 Durio zibethinus HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 70.3
Glyma.12G225300 Glycine max HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 70.3
Hma1.2p1_2752F.1_g327890 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 1.2e-09 66.2 46 56.5
MD03G1229100 Malus domestica HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 70.3
MD11G1249900 Malus domestica HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 73.0
Manes.15G087800 Manihot esculenta HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 73.0
Oeu024907.2 Olea europaea HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 70.3
PSO541G2422 Papaver somniferum HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 73.0
Prupe.4G180000 Prunus persica HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 73.0
Thecc.07G091600 Theobroma cacao HOM05D002958 ORTHO05D003558 1.2e-09 66.2 37 70.3
CSS0039562 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.6e-09 65.9 37 70.3
CSS0047160 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 1.6e-09 65.9 37 70.3
MELO3C019407.2 Cucumis melo HOM05D002958 ORTHO05D003558 1.6e-09 65.9 37 70.3
ECA240G3077 Erigeron canadensis HOM05D002958 ORTHO05D003558 1.6e-09 65.9 37 67.6
Gohir.A13G147033 Gossypium hirsutum HOM05D002958 ORTHO05D003558 1.6e-09 65.9 37 70.3
HanXRQChr09g0270181 Helianthus annuus HOM05D002958 ORTHO05D003558 1.6e-09 65.9 37 73.0
vmacro09527 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 1.6e-09 65.9 37 70.3
Actinidia09690 Actinidia chinensis HOM05D002958 ORTHO05D003558 2.1e-09 65.5 37 70.3
Ah.04g164780 Amaranthus hybridus HOM05D002958 ORTHO05D003558 2.1e-09 65.5 37 70.3
ClCG05G009310 Citrullus lanatus HOM05D002958 ORTHO05D003558 2.1e-09 65.5 37 67.6
Lj3g0007256 Lotus japonicus HOM05D002958 ORTHO05D003558 2.1e-09 65.5 37 70.3
Lalb_Chr20g0109601 Lupinus albus HOM05D002958 ORTHO05D003558 2.1e-09 65.5 45 55.6
Nn8g39708 Nelumbo nucifera HOM05D002958 ORTHO05D003558 2.1e-09 65.5 37 67.6
Sabra11G0103200 Salix brachista HOM05D002958 ORTHO05D003558 2.1e-09 65.5 37 70.3
Atru.chr2.2483 Acer truncatum HOM05D002958 ORTHO05D003558 2.8e-09 65.1 37 70.3
Aqoxy1G02381 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 2.8e-09 65.1 37 64.9
EL10Ac4g08198 Beta vulgaris HOM05D002958 ORTHO05D003558 2.8e-09 65.1 37 70.3
Cpa.g.sc83.52 Carica papaya HOM05D002958 ORTHO05D003558 2.8e-09 65.1 38 65.8
Lj8C110T8 Lonicera japonica HOM05D002958 ORTHO05D003558 2.8e-09 65.1 37 70.3
Lj3g0001420 Lotus japonicus HOM05D002958 ORTHO05D003558 2.8e-09 65.1 37 70.3
Lalb_Chr01g0016791 Lupinus albus HOM05D002958 ORTHO05D003558 2.8e-09 65.1 37 67.6
Oeu051071.1 Olea europaea HOM05D002958 ORTHO05D003558 2.8e-09 65.1 37 67.6
GSVIVG01020566001 Vitis vinifera HOM05D002958 ORTHO05D003558 2.8e-09 65.1 37 67.6
PSO675G8275 Papaver somniferum HOM05D002958 ORTHO05D003558 3.6e-09 64.7 37 70.3
Rhsim04G0021800 Rhododendron simsii HOM05D002958 ORTHO05D003558 3.6e-09 64.7 37 67.6
vmacro11871 Vaccinium macrocarpon HOM05D002958 ORTHO05D003558 3.6e-09 64.7 37 64.9
arahy.Tifrunner.gnm1.ann1.CK6KU2 Arachis hypogaea HOM05D002958 ORTHO05D003558 4.7e-09 64.3 37 67.6
arahy.Tifrunner.gnm1.ann1.VQ4NRX Arachis hypogaea HOM05D002958 ORTHO05D003558 4.7e-09 64.3 37 67.6
CSS0041223 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 4.7e-09 64.3 37 67.6
CANSAT56G4387 Cannabis sativa HOM05D002958 ORTHO05D003558 4.7e-09 64.3 41 68.3
Ciclev10007808m.g Citrus clementina HOM05D002958 ORTHO05D003558 4.7e-09 64.3 37 70.3
Gohir.D13G152056 Gossypium hirsutum HOM05D002958 ORTHO05D003558 4.7e-09 64.3 37 70.3
Lsat_1_v5_gn_7_104120 Lactuca sativa HOM05D002958 ORTHO05D003558 4.7e-09 64.3 34 76.5
MBI06_g23079_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 4.7e-09 64.3 37 70.3
MBI07_g30198_MAGBIO Magnolia biondii HOM05D002958 ORTHO05D003558 4.7e-09 64.3 37 73.0
Potri.001G399000 Populus trichocarpa HOM05D002958 ORTHO05D003558 4.7e-09 64.3 37 67.6
Rhsim06G0199700 Rhododendron simsii HOM05D002958 ORTHO05D003558 4.7e-09 64.3 49 53.1
Actinidia11087 Actinidia chinensis HOM05D002958 ORTHO05D003558 6.2e-09 63.9 37 67.6
Actinidia13022 Actinidia chinensis HOM05D002958 ORTHO05D003558 6.2e-09 63.9 37 67.6
Glyma.13G276000 Glycine max HOM05D002958 ORTHO05D003558 6.2e-09 63.9 37 64.9
Lj8C155G9 Lonicera japonica HOM05D002958 ORTHO05D003558 6.2e-09 63.9 37 67.6
Os11g0484000 Oryza sativa ssp. japonica HOM05D002958 ORTHO05D003558 6.2e-09 63.9 37 67.6
SHI21529 Sapria himalayana HOM05D002958 ORTHO05D003558 6.2e-09 63.9 34 73.5
SGA_v2.0_scaffold73G24254 Striga asiatica HOM05D002958 ORTHO05D003558 6.2e-09 63.9 34 73.5
Actinidia35245 Actinidia chinensis HOM05D002958 ORTHO05D003558 8.0e-09 63.5 37 67.6
CsaV3_4G033640 Cucumis sativus L. HOM05D002958 ORTHO05D003558 8.0e-09 63.5 37 70.3
Sed0013988 Sechium edule HOM05D002958 ORTHO05D003558 8.0e-09 63.5 37 70.3
Hund02228 Selenicereus undatus HOM05D002958 ORTHO05D003558 8.0e-09 63.5 37 67.6
HPP92_020260 Vanilla planifolia HOM05D002958 ORTHO05D003558 8.0e-09 63.5 37 67.6
VMungo1080G0087 Vigna mungo HOM05D002958 ORTHO05D003558 8.0e-09 63.5 37 62.2
Aqoxy4G00736 Aquilegia oxysepala HOM05D002958 ORTHO05D003558 1.0e-08 63.2 37 64.9
Haze_13197 Corylus avellana HOM05D002958 ORTHO05D003558 1.0e-08 63.2 37 67.6
Dinv13401 Davidia involucrata HOM05D002958 ORTHO05D003558 1.0e-08 63.2 37 67.6
Duzib170G0760 Durio zibethinus HOM05D002958 ORTHO05D003558 1.0e-08 63.2 37 70.3
Actinidia18769 Actinidia chinensis HOM05D002958 ORTHO05D003558 1.4e-08 62.8 37 67.6
Hma1.2p1_0458F.1_g157030 Hydrangea macrophylla HOM05D002958 ORTHO05D003558 1.4e-08 62.8 37 64.9
Manes.13G144832 Manihot esculenta HOM05D002958 ORTHO05D003558 1.4e-08 62.8 37 67.6
Potri.011G118132 Populus trichocarpa HOM05D002958 ORTHO05D003558 1.4e-08 62.8 37 67.6
TWI39G0621 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 1.4e-08 62.8 37 67.6
Cfa020573 Carpinus fangiana HOM05D002958 ORTHO05D003558 1.8e-08 62.4 37 67.6
Haze_09438 Corylus avellana HOM05D002958 ORTHO05D003558 1.8e-08 62.4 37 67.6
Dinv20182 Davidia involucrata HOM05D002958 ORTHO05D003558 1.8e-08 62.4 37 67.6
Nitab4.5_0001241g0080 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.8e-08 62.4 41 61.0
Sc16g0007030 Simmondsia chinensis HOM05D002958 ORTHO05D003558 1.8e-08 62.4 37 62.2
TWI14G0888 Tripterygium wilfordii HOM05D002958 ORTHO05D003558 1.8e-08 62.4 37 67.6
CSS0016776 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 2.3e-08 62.0 37 59.5
CSS0042025 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 2.3e-08 62.0 37 59.5
Cc05_g11940 Coffea canephora HOM05D002958 ORTHO05D003558 2.3e-08 62.0 37 62.2
QL08p022191 Quercus lobata HOM05D002958 ORTHO05D003558 2.3e-08 62.0 37 67.6
SEGI_10776 Sequoiadendron giganteum HOM05D002958 ORTHO05D003558 2.3e-08 62.0 37 64.9
Solyc10g007050.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 2.3e-08 62.0 37 67.6
Sopen10g002950 Solanum pennellii HOM05D002958 ORTHO05D003558 2.3e-08 62.0 37 67.6
PGSC0003DMG400025041 Solanum tuberosum HOM05D002958 ORTHO05D003558 2.3e-08 62.0 37 67.6
Eucgr.F01149 Eucalyptus grandis HOM05D002958 ORTHO05D003558 3.1e-08 61.6 37 67.6
Sabra16G0261600 Salix brachista HOM05D002958 ORTHO05D003558 3.1e-08 61.6 37 64.9
Thecc.02G181900 Theobroma cacao HOM05D002958 ORTHO05D003558 3.1e-08 61.6 34 76.5
ATR0737G076 Amborella trichopoda HOM05D002958 ORTHO05D003558 4.0e-08 61.2 37 64.9
CSS0011837 Camellia sinensis var. sinensis HOM05D002958 ORTHO05D003558 4.0e-08 61.2 34 70.6
ClCG11G018020 Citrullus lanatus HOM05D002958 ORTHO05D003558 4.0e-08 61.2 37 67.6
COL.COLO4_36342 Corchorus olitorius HOM05D002958 ORTHO05D003558 4.0e-08 61.2 33 75.8
Migut.M00798 Erythranthe guttata HOM05D002958 ORTHO05D003558 4.0e-08 61.2 37 62.2
DCAR_020992 Daucus carota HOM05D002958 ORTHO05D003558 5.2e-08 60.8 37 62.2
Dinv14925 Davidia involucrata HOM05D002958 ORTHO05D003558 5.2e-08 60.8 37 62.2
Eucgr.F03307 Eucalyptus grandis HOM05D002958 ORTHO05D003558 5.2e-08 60.8 37 67.6
Psat5g242200 Pisum sativum HOM05D002958 ORTHO05D003558 6.8e-08 60.5 37 62.2
BcaNung04830 Brassica carinata HOM05D002958 ORTHO05D039432 8.9e-08 60.1 29 82.8
CAN.G162.50 Capsicum annuum HOM05D002958 ORTHO05D003558 8.9e-08 60.1 37 64.9
Lsat_1_v5_gn_9_97501 Lactuca sativa HOM05D002958 ORTHO05D003558 1.2e-07 59.7 37 56.8
Medtr2g079110 Medicago truncatula HOM05D002958 ORTHO05D003558 1.2e-07 59.7 37 62.2
Nitab4.5_0000207g0070 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.2e-07 59.7 37 62.2
Nitab4.5_0001336g0100 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.2e-07 59.7 37 64.9
Nitab4.5_0002383g0020 Nicotiana tabacum HOM05D002958 ORTHO05D003558 1.2e-07 59.7 37 62.2
Pp3c3_4430 Physcomitrium patens HOM05D002958 ORTHO05D003558 1.2e-07 59.7 41 68.3
TPR.G7973 Trifolium pratense HOM05D002958 ORTHO05D003558 1.2e-07 59.7 37 62.2
Zm00001eb169620 Zea mays HOM05D002958 ORTHO05D003558 1.2e-07 59.7 37 64.9
MSTRG.15237 Avicennia marina HOM05D002958 ORTHO05D003558 2.0e-07 58.9 37 64.9
Ca_03507_v3 Cicer arietinum L. HOM05D002958 ORTHO05D003558 2.0e-07 58.9 37 62.2
Peaxi162Scf00027g00211 Petunia axillaris HOM05D002958 ORTHO05D003558 2.6e-07 58.5 37 59.5
Pp3c4_28740 Physcomitrium patens HOM05D002958 ORTHO05D003558 2.6e-07 58.5 37 67.6
CiPaw.11G170500 Carya illinoinensis HOM05D002958 ORTHO05D003558 3.4e-07 58.2 37 67.6
HanXRQChr12g0364161 Helianthus annuus HOM05D002958 ORTHO05D003558 3.4e-07 58.2 37 56.8
Peaxi162Scf00069g01630 Petunia axillaris HOM05D002958 ORTHO05D003558 3.4e-07 58.2 37 62.2
SMO146G0056 Selaginella moellendorffii HOM05D002958 ORTHO05D003558 4.4e-07 57.8 46 60.9
Solyc07g063040.3 Solanum lycopersicum HOM05D002958 ORTHO05D003558 4.4e-07 57.8 37 59.5
PGSC0003DMG400012412 Solanum tuberosum HOM05D002958 ORTHO05D003558 4.4e-07 57.8 37 62.2
CDE02G0813 Ceratophyllum demersum HOM05D002958 ORTHO05D003558 7.5e-07 57.0 37 59.5
QL08p039561 Quercus lobata HOM05D002958 ORTHO05D003558 9.8e-07 56.6 45 48.9
unitig_578.g15672 Utricularia gibba HOM05D002958 ORTHO05D003558 9.8e-07 56.6 37 56.8
CAN.G1119.24 Capsicum annuum HOM05D002958 ORTHO05D003558 1.3e-06 56.2 34 61.8
Sopen07g031230 Solanum pennellii HOM05D002958 ORTHO05D003558 3.7e-06 54.7 37 56.8
SMO356G0618 Selaginella moellendorffii HOM05D002958 ORTHO05D003558 4.9e-06 54.3 37 59.5


User provided reference genes

Program Settings