Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 9.5e-268 926.4 509 100.0
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 7.5e-265 916.8 516 98.4
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 1.7e-261 905.6 509 97.1
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 1.9e-260 902.1 509 97.1
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 5.8e-257 890.6 514 95.5
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 6.4e-248 860.5 520 92.9
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 3.3e-236 821.6 496 90.5
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 7.4e-212 740.7 516 79.1
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 1.2e-190 670.2 495 77.8
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 5.3e-186 654.8 495 70.7
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 9.4e-183 644.0 498 69.9
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 1.4e-181 640.2 498 69.9
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 6.7e-181 637.9 496 68.5
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 8.8e-181 637.5 496 68.3
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 8.8e-181 637.5 498 70.3
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 3.3e-180 635.6 497 69.6
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 8.2e-179 630.9 500 68.2
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 5.3e-178 628.2 498 68.3
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 2.6e-177 625.9 498 68.9
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 3.5e-177 625.5 501 68.3
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 4.5e-177 625.2 495 69.1
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 7.7e-177 624.4 493 68.0
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 1.3e-176 623.6 490 68.6
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 1.3e-176 623.6 491 70.1
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 1.7e-176 623.2 490 68.6
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 6.5e-176 621.3 490 69.0
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 1.6e-174 616.7 490 69.0
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 4.7e-174 615.1 502 66.9
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 3.0e-173 612.5 496 66.3
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 3.0e-173 612.5 492 67.9
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 8.8e-173 610.9 493 68.8
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 2.0e-172 609.8 494 66.8
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 4.4e-172 608.6 494 66.8
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 7.5e-172 607.8 497 67.0
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 9.7e-172 607.4 498 65.9
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 9.7e-172 607.4 496 67.9
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 3.7e-171 605.5 480 67.7
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 3.7e-171 605.5 496 68.8
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 4.8e-171 605.1 494 66.4
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 8.2e-171 604.4 503 67.6
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 1.4e-170 603.6 491 66.8
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 1.8e-170 603.2 494 65.4
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 7.0e-170 601.3 492 66.7
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 9.1e-170 600.9 369 89.7
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 9.1e-170 600.9 523 63.3
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 2.0e-169 599.7 502 65.7
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 2.7e-169 599.4 505 64.2
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 2.7e-169 599.4 501 67.1
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 4.5e-169 598.6 491 66.2
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 1.3e-168 597.0 494 67.2
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 8.5e-168 594.3 498 66.1
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 5.5e-167 591.7 503 65.2
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 9.4e-167 590.9 499 66.3
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 4.7e-166 588.6 493 64.9
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 1.4e-165 587.0 516 63.2
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 2.6e-164 582.8 561 60.2
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 7.5e-164 581.3 498 66.9
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 6.3e-163 578.2 489 64.6
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 1.4e-162 577.0 361 90.3
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 5.9e-161 571.6 488 64.8
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 7.7e-161 571.2 498 63.5
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 1.7e-160 570.1 495 62.8
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 2.9e-160 569.3 504 62.9
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 1.1e-159 567.4 500 61.6
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 2.5e-159 566.2 531 60.5
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 1.2e-158 563.9 499 63.3
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 6.8e-157 558.1 489 65.6
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 2.4e-154 549.7 440 69.8
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 5.4e-154 548.5 496 61.9
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 3.5e-153 545.8 489 62.0
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 1.0e-152 544.3 495 61.2
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 1.1e-151 540.8 456 64.5
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 2.5e-151 539.7 481 62.6
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 1.2e-150 537.3 456 66.4
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 4.0e-149 532.3 517 59.8
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 4.4e-148 528.9 505 59.2
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 9.2e-146 521.2 476 63.2
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 7.8e-145 518.1 467 63.0
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 7.8e-145 518.1 542 56.1
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 5.2e-141 505.4 463 61.8
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 7.5e-140 501.5 448 62.3
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.2e-139 500.0 453 61.8
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 8.3e-139 498.0 487 58.3
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 6.0e-137 491.9 410 67.8
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 1.3e-136 490.7 407 66.6
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 6.2e-134 481.9 468 59.6
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 2.2e-131 473.4 304 90.8
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 6.8e-125 451.8 432 58.8
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 2.1e-113 413.7 362 65.5
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 8.7e-104 381.7 496 51.0
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 7.1e-98 362.1 502 45.6
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 1.5e-87 327.8 321 59.2
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 1.3e-86 324.7 464 46.8
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 3.9e-80 303.1 252 65.1
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 3.0e-72 276.9 253 62.8
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 7.4e-71 272.3 246 61.8
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 3.2e-66 256.9 214 62.6
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 1.4e-61 241.5 246 59.3
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 2.7e-57 227.3 164 70.7
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 1.8e-56 224.6 209 61.7
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 2.7e-52 210.7 155 70.3
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 4.8e-46 189.9 167 62.9
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 1.8e-45 188.0 133 73.7
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 1.0e-40 172.2 137 64.2
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 9.8e-39 165.6 151 61.6
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 3.9e-35 153.7 487 31.2
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 2.5e-34 151.0 166 53.6
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 5.4e-29 133.3 93 76.3
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 2.0e-28 131.3 95 73.7
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 1.3e-27 128.6 86 76.7
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 3.3e-26 124.0 95 70.5
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 8.9e-24 115.9 72 83.3
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.9e-22 110.9 75 74.7
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 8.3e-22 109.4 102 60.8
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 1.0e-19 102.4 76 72.4
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 1.2e-17 95.5 65 70.8
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.3e-14 85.5 59 78.0
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 1.9e-13 81.6 57 78.9


User provided reference genes

Program Settings