Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 3.2e-156 555.1 283 100.0
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.8e-151 539.3 283 97.2
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.8e-151 539.3 283 97.2
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.8e-143 512.7 273 96.0
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-141 506.5 259 98.8
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 2.2e-141 505.8 259 98.8
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 6.5e-141 504.2 259 98.5
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 6.5e-141 504.2 259 98.5
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.1e-140 503.4 259 98.1
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 5.9e-134 481.1 259 94.6
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 7.6e-134 480.7 259 93.1
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.8e-133 478.4 259 93.1
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 8.5e-133 477.2 259 93.4
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 3.2e-132 475.3 259 92.3
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 4.2e-132 474.9 259 93.4
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 4.6e-131 471.5 259 92.3
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.3e-130 469.9 259 90.0
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.0e-130 468.8 259 89.6
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 3.9e-130 468.4 259 90.3
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.1e-129 466.8 259 90.0
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.5e-129 466.5 259 91.5
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.9e-129 466.1 259 89.2
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.5e-129 465.7 259 89.6
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 4.3e-129 464.9 259 89.6
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 4.3e-129 464.9 259 89.6
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 7.4e-129 464.2 259 89.6
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 9.7e-129 463.8 259 90.3
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 9.7e-129 463.8 259 90.0
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 9.7e-129 463.8 259 90.0
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.7e-129 463.8 259 88.8
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.7e-129 463.8 259 88.8
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.3e-128 463.4 258 90.3
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.3e-128 463.4 259 90.0
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.3e-128 463.4 259 88.8
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.7e-128 463.0 259 88.8
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.7e-128 463.0 259 90.3
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 2.8e-128 462.2 259 88.8
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 3.7e-128 461.8 259 88.0
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 3.7e-128 461.8 259 88.8
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 6.3e-128 461.1 259 89.6
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 6.3e-128 461.1 259 88.0
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 8.2e-128 460.7 259 89.6
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 8.2e-128 460.7 259 89.6
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 8.2e-128 460.7 259 89.6
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 8.2e-128 460.7 262 88.5
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.1e-127 460.3 259 87.6
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.1e-127 460.3 259 89.2
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.1e-127 460.3 259 88.8
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.1e-127 460.3 259 88.4
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.4e-127 459.9 259 88.4
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.8e-127 459.5 259 88.4
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.8e-127 459.5 259 88.4
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.8e-127 459.5 259 88.8
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.8e-127 459.5 259 88.8
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.4e-127 459.1 259 88.0
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.4e-127 459.1 259 89.2
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 2.4e-127 459.1 259 88.0
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 4.1e-127 458.4 259 89.2
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.1e-127 458.4 259 87.6
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 4.1e-127 458.4 259 87.3
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 4.1e-127 458.4 262 87.4
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 5.3e-127 458.0 259 88.8
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 5.3e-127 458.0 259 89.6
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 5.3e-127 458.0 258 88.4
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 5.3e-127 458.0 259 89.2
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 6.9e-127 457.6 259 88.4
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 6.9e-127 457.6 259 88.4
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 9.1e-127 457.2 259 88.4
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.2e-126 456.8 259 88.4
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.5e-126 456.4 259 87.6
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.5e-126 456.4 259 88.0
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 2.0e-126 456.1 259 87.6
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.6e-126 455.7 259 89.2
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 3.4e-126 455.3 259 88.0
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.4e-126 455.3 259 87.3
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 3.4e-126 455.3 259 87.3
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.5e-126 454.9 259 88.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 4.5e-126 454.9 259 88.8
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 5.9e-126 454.5 259 87.6
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 7.7e-126 454.1 259 87.3
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 7.7e-126 454.1 259 88.0
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 7.7e-126 454.1 259 88.0
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 7.7e-126 454.1 259 87.6
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.7e-125 453.0 259 86.9
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.2e-125 452.6 259 86.9
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 2.9e-125 452.2 259 86.9
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 3.8e-125 451.8 259 86.9
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 3.8e-125 451.8 259 87.3
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.8e-125 451.8 259 87.3
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 3.8e-125 451.8 262 88.2
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 3.8e-125 451.8 263 87.1
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 5.0e-125 451.4 259 87.6
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.5e-125 451.1 259 87.6
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 6.5e-125 451.1 259 86.1
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 6.5e-125 451.1 259 87.3
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 8.5e-125 450.7 259 86.5
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 8.5e-125 450.7 259 86.9
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.1e-124 450.3 259 85.7
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.4e-124 449.9 259 85.7
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.4e-124 449.9 259 86.9
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.9e-124 449.5 259 86.9
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.5e-124 449.1 259 86.9
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.5e-124 449.1 283 81.6
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 4.2e-124 448.4 262 86.3
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 4.2e-124 448.4 259 85.7
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 4.2e-124 448.4 259 86.1
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 9.4e-124 447.2 258 88.4
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.6e-123 446.4 259 85.7
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.6e-123 446.4 259 85.7
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.6e-123 446.4 259 85.7
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.1e-123 446.0 254 86.6
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 2.1e-123 446.0 259 86.5
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 3.6e-123 445.3 259 85.3
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 3.6e-123 445.3 259 85.3
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.0e-122 443.7 268 84.3
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 1.0e-122 443.7 259 84.9
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 2.3e-122 442.6 259 84.9
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 6.7e-122 441.0 259 84.6
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 6.7e-122 441.0 259 84.9
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.1e-121 440.3 254 85.8
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.5e-121 439.9 274 81.8
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.0e-121 439.5 259 84.9
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 4.4e-121 438.3 259 84.6
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 5.7e-121 438.0 259 83.4
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 9.7e-121 437.2 259 83.4
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 5.3e-119 431.4 259 81.5
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-117 426.8 275 79.6
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 8.5e-117 424.1 238 89.5
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.1e-116 423.7 259 82.6
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 9.4e-116 420.6 259 79.2
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 9.4e-116 420.6 259 81.5
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 9.4e-116 420.6 259 81.5
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 3.3e-113 412.1 259 76.4
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 7.4e-113 411.0 259 79.5
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 4.8e-112 408.3 259 76.4
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.3e-111 404.8 239 84.5
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.2e-110 403.7 259 81.1
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.6e-110 403.3 239 84.1
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 8.5e-109 397.5 213 91.5
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 6.7e-106 387.9 259 78.8
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.3e-105 385.6 199 96.0
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 2.8e-104 382.5 220 87.3
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 4.8e-104 381.7 201 92.0
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.2e-102 377.1 261 73.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.7e-102 375.9 307 68.1
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 3.2e-100 369.0 252 75.4
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.6e-99 366.7 259 75.3
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.1e-99 366.3 195 89.7
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 4.7e-99 365.2 238 77.7
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-98 363.2 335 60.3
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 2.9e-93 345.9 258 67.1
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.0e-90 337.4 255 73.7
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 9.2e-87 324.3 177 87.6
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 3.6e-83 312.4 161 93.2
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 1.9e-71 273.5 229 59.4
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 6.0e-70 268.5 149 96.0
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 4.3e-68 262.3 240 60.0
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 3.6e-67 259.2 141 97.9
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.7e-56 223.8 113 92.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.9e-50 201.8 133 80.5
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 9.9e-49 198.0 98 92.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 3.1e-42 176.4 140 67.1
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 6.9e-42 175.3 196 53.1
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 8.4e-40 168.3 100 93.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 3.2e-39 166.4 108 75.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.6e-38 164.1 271 43.9
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.8e-37 160.6 135 62.2
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.9e-36 157.1 92 81.5
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-34 151.4 197 47.2
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 6.7e-29 132.1 81 84.0
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 5.6e-28 129.0 91 72.5
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.2e-22 111.3 111 59.5
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.4e-15 87.8 62 72.6
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 6.7e-13 79.0 81 56.8
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 2.2e-11 73.9 85 52.9
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-08 64.7 38 81.6
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.3e-08 64.7 34 94.1
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 2.9e-08 63.5 59 57.6
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.8e-08 63.2 42 78.6
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 5.0e-08 62.8 66 53.0
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 2.5e-07 60.5 34 88.2


User provided reference genes

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