Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.1e-306 1055.8 543 100.0
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 9.4e-306 1052.7 543 99.6
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 1.3e-283 979.2 524 95.8
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 4.1e-277 957.6 522 93.7
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 2.9e-275 951.4 522 92.7
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.1e-269 931.4 522 91.4
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.0e-267 926.4 523 90.4
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 1.3e-262 909.4 527 89.0
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.8e-262 908.3 637 76.5
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 3.7e-262 907.9 626 77.6
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.4e-245 852.8 527 84.1
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 2.4e-245 852.0 526 83.5
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 9.2e-245 850.1 524 82.3
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.6e-241 838.2 538 80.7
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.7e-235 819.3 522 81.0
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.6e-225 786.2 517 79.9
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.6e-223 778.9 518 74.9
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 2.4e-221 772.3 523 73.6
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 5.4e-221 771.2 516 74.8
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 8.7e-219 763.8 534 72.8
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.5e-218 762.3 516 74.4
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.3e-218 761.9 532 73.3
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.8e-217 758.8 534 73.6
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 6.2e-217 757.7 537 73.7
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.1e-216 756.9 520 72.5
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.7e-214 749.6 520 72.7
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 3.8e-214 748.4 521 72.0
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 6.4e-214 747.7 524 71.4
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.1e-213 746.9 492 80.1
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.1e-213 746.9 524 71.6
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.9e-213 746.1 524 72.9
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.4e-213 745.7 519 71.9
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 3.2e-213 745.3 525 71.2
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 5.4e-213 744.6 524 71.6
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 5.4e-213 744.6 524 71.6
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 7.1e-213 744.2 534 70.4
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 2.7e-212 742.3 530 70.9
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.8e-211 739.6 531 70.6
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.8e-209 732.3 530 69.4
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 6.9e-208 727.6 524 71.0
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 9.0e-208 727.2 601 63.9
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.2e-206 722.6 499 72.1
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 2.2e-206 722.6 524 69.7
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 6.5e-206 721.1 519 69.9
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 6.5e-206 721.1 527 69.3
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 1.1e-205 720.3 516 70.2
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 3.2e-205 718.8 524 69.7
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 5.5e-205 718.0 536 68.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.1e-205 717.6 517 71.2
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.6e-204 716.5 516 72.1
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.9e-203 711.8 543 67.2
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.5e-202 709.9 518 68.5
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.9e-202 709.5 535 68.6
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 2.5e-202 709.1 535 66.7
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 5.7e-202 708.0 516 70.3
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.4e-200 703.4 498 70.9
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 3.1e-200 702.2 475 80.2
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 3.4e-199 698.7 505 73.3
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 2.7e-196 689.1 530 67.0
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 1.0e-195 687.2 475 78.5
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.3e-193 680.2 511 68.9
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 2.2e-193 679.5 482 72.2
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.1e-192 677.2 533 66.8
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.9e-189 666.4 524 67.2
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 1.4e-187 660.2 476 70.0
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.5e-186 656.8 529 65.0
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 6.3e-185 651.4 530 65.3
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.1e-181 640.6 548 63.7
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.7e-179 631.3 448 70.5
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.5e-178 630.2 548 62.6
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.3e-178 629.0 526 60.8
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.7e-177 626.7 563 61.5
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.3e-176 621.7 512 64.8
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 2.1e-172 609.8 557 57.6
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.0e-171 607.4 420 73.8
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 6.7e-171 604.7 426 71.8
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 8.8e-171 604.4 532 60.0
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.1e-170 604.0 416 73.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.3e-169 600.5 461 68.8
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-168 597.4 548 60.6
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 1.7e-166 590.1 458 65.7
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.1e-165 587.4 429 70.4
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 3.2e-165 585.9 513 60.2
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.2e-165 585.9 499 62.5
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 9.4e-165 584.3 422 70.9
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 5.7e-162 575.1 430 70.0
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.7e-161 573.5 586 55.8
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.2e-159 567.4 527 55.8
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.3e-158 563.9 514 58.4
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 6.1e-156 555.1 450 64.2
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 5.7e-154 548.5 499 57.9
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.5e-151 539.3 387 72.9
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 5.0e-150 535.4 583 52.7
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.5e-149 533.9 502 56.6
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.2e-148 530.8 575 53.2
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.4e-147 527.3 427 65.1
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 7.0e-144 515.0 452 58.4
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 8.6e-142 508.1 463 59.4
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 2.0e-138 496.9 390 67.2
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.3e-137 494.2 469 55.7
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.6e-130 469.9 430 60.2
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 9.2e-128 461.5 379 63.9
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.2e-120 436.4 252 88.1
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.9e-117 427.2 396 58.6
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.2e-116 424.5 529 45.6
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.1e-116 423.7 304 71.1
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.2e-114 417.9 306 68.3
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.8e-113 412.9 481 47.6
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 6.9e-107 392.1 516 44.4
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.6e-106 390.2 341 61.3
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 5.4e-104 382.5 433 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.3e-94 350.5 443 44.7
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.8e-92 343.6 291 62.9
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 6.7e-86 322.4 267 63.7
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.5e-77 294.7 398 45.2
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 3.3e-77 293.5 218 66.5
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 3.3e-77 293.5 164 90.2
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.3e-70 270.8 469 38.8
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 8.8e-70 268.9 434 38.9
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.2e-68 264.2 194 67.5
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 2.2e-65 254.2 187 68.4
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 7.2e-64 249.2 218 61.9
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.4e-54 218.4 678 27.9
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.3e-52 211.8 199 57.3
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.0e-50 204.5 189 57.7
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.2e-41 174.5 162 59.3
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 2.3e-38 164.5 432 31.7
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 2.6e-37 161.0 177 52.0
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 3.7e-36 157.1 97 81.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 4.9e-36 156.8 122 60.7
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.8e-35 154.8 151 52.3
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.7e-29 133.3 109 67.0
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.4e-28 129.8 156 44.9
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.4e-28 129.8 156 44.9
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 5.9e-26 123.2 97 57.7
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.0e-25 122.5 86 67.4
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.0e-25 122.5 511 28.0
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 5.0e-25 120.2 96 67.7
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.8e-23 114.4 97 57.7
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 4.0e-22 110.5 71 78.9
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 2.2e-20 104.8 90 64.4
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 4.9e-20 103.6 81 56.8
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.1e-19 100.5 62 85.5
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.1e-19 100.5 62 85.5
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 7.8e-18 96.3 67 71.6
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 7.3e-16 89.7 56 78.6
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 6.2e-15 86.7 111 40.5
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 8.1e-15 86.3 246 31.3
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 9.8e-13 79.3 50 78.0
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 8.3e-12 76.3 83 54.2
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.2e-10 72.4 54 55.6
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.6e-10 72.0 37 91.9
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.6e-07 60.8 189 30.2


User provided reference genes

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