Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 0.0e+00 1298.9 654 100.0
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 0.0e+00 1267.7 654 97.1
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 0.0e+00 1228.0 661 94.4
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 0.0e+00 1227.2 660 94.4
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 0.0e+00 1187.9 661 92.1
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 0.0e+00 1111.3 661 85.6
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 1.2e-304 1049.3 665 80.8
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 3.6e-296 1021.1 657 79.9
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 2.2e-293 1011.9 663 79.2
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 6.2e-288 993.8 660 78.0
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 2.2e-248 862.4 660 70.3
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 3.5e-222 775.4 667 62.8
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 5.7e-209 731.5 663 57.6
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.0e-202 710.7 661 56.0
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 4.4e-201 705.3 666 55.1
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 2.2e-200 703.0 675 55.4
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 1.0e-197 694.1 664 55.0
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 1.7e-197 693.3 665 56.7
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 9.5e-196 687.6 660 54.8
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 4.4e-193 678.7 650 54.6
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 4.4e-193 678.7 667 53.5
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 1.4e-191 673.7 645 54.6
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 4.7e-187 658.7 671 52.5
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 2.7e-182 642.9 664 53.2
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 2.5e-180 636.3 671 51.6
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.2e-179 634.0 663 51.4
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 6.9e-178 628.2 668 51.0
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 7.6e-177 624.8 658 51.4
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 8.4e-176 621.3 698 50.3
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 1.1e-175 620.9 671 51.0
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 7.1e-175 618.2 667 50.8
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.3e-173 614.0 656 50.6
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 5.1e-173 612.1 719 49.2
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 9.6e-172 607.8 655 51.6
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 1.4e-167 594.0 670 47.9
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 3.2e-167 592.8 673 48.1
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.6e-166 590.5 669 50.1
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 7.9e-166 588.2 604 53.0
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 3.0e-165 586.3 675 49.6
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 4.3e-164 582.4 686 47.5
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 1.3e-163 580.9 673 47.3
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.6e-163 580.5 670 48.5
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 6.9e-162 575.1 670 48.2
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 3.4e-161 572.8 671 48.3
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 7.6e-161 571.6 757 44.9
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 4.9e-160 568.9 676 48.1
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 1.9e-159 567.0 671 48.0
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 9.3e-159 564.7 786 43.4
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 4.6e-158 562.4 669 48.1
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 5.1e-157 558.9 673 48.7
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.1e-156 557.8 588 51.4
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 5.8e-153 545.4 491 56.2
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 3.8e-152 542.7 665 45.7
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 4.9e-152 542.3 675 46.5
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 5.5e-151 538.9 676 46.3
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 7.1e-151 538.5 499 54.5
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 9.3e-151 538.1 674 45.8
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 7.9e-150 535.0 604 48.3
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.0e-149 534.6 572 49.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.0e-149 534.6 666 46.5
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 6.7e-149 531.9 657 45.5
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 2.5e-148 530.0 673 45.9
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 2.8e-147 526.6 686 44.5
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 2.8e-147 526.6 421 60.3
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 2.6e-145 520.0 473 55.2
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 2.6e-145 520.0 539 52.1
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 2.6e-145 520.0 675 44.9
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 1.1e-143 514.6 598 46.0
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.5e-137 494.2 597 47.6
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 3.4e-137 493.0 660 42.0
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 1.0e-136 491.5 462 53.9
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 3.0e-133 479.9 522 47.3
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 5.7e-132 475.7 666 43.4
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 3.1e-130 469.9 570 47.0
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 1.4e-127 461.1 678 42.3
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 2.2e-123 447.2 718 38.6
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.8e-123 446.8 709 39.9
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 5.9e-121 439.1 703 38.1
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.0e-120 438.3 694 40.2
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 3.8e-120 436.4 671 39.6
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 4.2e-119 433.0 486 46.9
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 1.2e-116 424.9 713 37.9
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 1.5e-116 424.5 592 41.4
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 9.5e-103 378.6 690 36.2
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 5.2e-101 372.9 808 33.3
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 5.4e-98 362.8 507 42.4
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 9.2e-98 362.1 507 42.4
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.2e-92 345.1 657 36.2
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.0e-84 317.8 712 33.0
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 8.3e-83 312.4 440 40.2
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 2.8e-78 297.4 263 56.3
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 3.5e-73 280.4 387 43.2
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 4.4e-68 263.5 259 53.3
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 4.4e-68 263.5 522 34.3
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 2.9e-67 260.8 491 33.2
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.3e-63 247.3 258 51.6
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 1.2e-60 238.8 153 86.9
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 4.9e-51 206.8 380 37.4
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 4.8e-46 190.3 197 48.7
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 6.9e-45 186.4 384 33.9
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 4.2e-42 177.2 394 33.0
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.5e-36 158.7 417 29.5
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.9e-34 151.8 173 43.4
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 3.2e-34 151.0 175 45.7
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 7.1e-34 149.8 200 40.5
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 5.7e-31 140.2 84 78.6
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.3e-30 139.0 478 28.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 8.5e-27 126.3 127 46.5
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 4.8e-22 110.5 212 38.7
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.3e-19 102.4 113 43.4
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 1.8e-16 92.0 140 48.6
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 3.0e-16 91.3 176 40.9
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.6e-15 88.2 152 34.9
AL6G43550 Arabidopsis lyrata HOM05D001764 ORTHO05D079172 2.5e-10 71.6 126 32.5
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 8.0e-09 66.6 94 38.3


User provided reference genes

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