Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.2e-170 603.2 338 100.0
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 1.8e-166 589.3 338 97.6
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 5.5e-155 551.2 315 98.4
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 6.1e-154 547.7 315 98.1
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.6e-149 533.1 318 94.3
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 2.2e-127 459.5 339 78.2
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 1.1e-107 394.0 352 68.8
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 5.6e-107 391.7 352 67.9
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 6.2e-106 388.3 368 67.4
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 4.0e-105 385.6 352 68.8
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 3.4e-104 382.5 365 66.8
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 1.5e-91 340.5 339 62.8
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 7.6e-80 301.6 400 53.5
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 2.2e-71 273.5 360 52.2
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 2.4e-70 270.0 376 50.3
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 6.0e-69 265.4 413 46.7
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 3.9e-68 262.7 407 48.6
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 5.1e-68 262.3 296 53.7
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.1e-67 261.2 416 45.7
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 2.5e-67 260.0 297 52.9
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 2.8e-66 256.5 411 46.2
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.8e-66 256.5 408 48.5
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 3.7e-66 256.1 260 57.3
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 3.7e-66 256.1 412 46.4
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 1.1e-65 254.6 300 52.0
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 4.0e-65 252.7 375 51.5
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 5.3e-65 252.3 407 46.9
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 5.3e-65 252.3 413 46.0
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 6.9e-65 251.9 261 55.9
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 6.9e-65 251.9 397 46.9
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 1.5e-64 250.8 411 47.4
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.0e-64 250.4 418 45.9
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 2.6e-64 250.0 422 44.5
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 5.8e-64 248.8 411 47.4
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.0e-63 248.1 405 46.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 1.0e-63 248.1 413 44.6
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.0e-63 248.1 261 54.0
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.3e-63 247.7 261 54.4
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 2.2e-63 246.9 290 52.4
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.2e-63 246.9 418 45.7
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 4.9e-63 245.7 261 54.4
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.1e-62 244.6 283 51.9
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.1e-62 244.6 303 50.5
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 1.1e-62 244.6 411 42.8
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 2.5e-62 243.4 364 50.5
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 3.2e-62 243.0 420 43.6
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 2.7e-61 240.0 387 46.8
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 1.3e-60 237.7 388 45.4
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 2.3e-60 236.9 294 49.3
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 3.9e-60 236.1 377 47.5
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 3.9e-60 236.1 388 45.1
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.1e-59 234.6 299 48.5
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.9e-59 233.8 406 45.8
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.9e-59 233.8 388 45.1
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.3e-58 231.1 407 44.0
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.3e-58 231.1 403 44.9
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 1.3e-58 231.1 412 41.0
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 2.1e-58 230.3 425 44.2
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 2.8e-58 229.9 279 52.3
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 4.8e-58 229.2 418 43.1
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 4.8e-58 229.2 274 51.8
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 6.3e-58 228.8 255 53.7
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 8.2e-58 228.4 271 51.3
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 1.8e-57 227.3 262 51.9
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 2.4e-57 226.9 278 50.4
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 3.1e-57 226.5 413 42.6
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 3.1e-57 226.5 325 45.5
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 4.1e-57 226.1 261 51.0
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 5.3e-57 225.7 380 46.1
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 2.6e-56 223.4 326 48.2
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 3.4e-56 223.0 274 48.2
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 4.5e-56 222.6 292 46.6
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.0e-55 221.5 248 53.2
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.3e-55 221.1 264 52.3
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 2.9e-55 219.9 375 45.6
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 2.9e-55 219.9 287 48.4
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 3.8e-55 219.5 365 45.5
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 5.0e-55 219.2 388 43.6
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 5.0e-55 219.2 270 48.5
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.5e-54 216.9 258 54.3
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 4.2e-54 216.1 377 45.9
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.0e-52 211.5 223 51.1
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 8.7e-52 208.4 312 42.6
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 8.7e-52 208.4 242 50.4
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.1e-51 208.0 382 44.0
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.1e-51 208.0 315 44.4
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.5e-51 207.6 352 46.3
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.4e-51 205.3 389 44.2
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.4e-51 205.3 388 43.6
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 2.8e-50 203.4 372 43.0
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 6.3e-50 202.2 236 51.3
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 8.2e-50 201.8 362 42.8
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 9.1e-49 198.4 401 42.9
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.2e-48 198.0 389 42.9
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 2.0e-48 197.2 393 41.2
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 4.5e-48 196.1 388 42.8
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.3e-47 194.5 436 37.2
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 6.5e-47 192.2 230 49.6
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 2.5e-46 190.3 378 42.3
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 5.5e-46 189.1 373 42.9
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 9.4e-46 188.3 372 43.5
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 6.1e-45 185.7 237 49.8
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 7.9e-45 185.3 264 49.6
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.4e-44 184.5 367 43.3
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 5.1e-44 182.6 217 48.8
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.5e-43 181.0 370 41.1
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 1.7e-42 177.6 353 44.5
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 4.8e-42 176.0 411 36.7
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 8.2e-42 175.3 261 42.9
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.1e-41 174.9 293 41.6
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 6.9e-41 172.2 377 36.1
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 4.5e-40 169.5 295 40.7
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.4e-38 164.5 190 45.8
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 1.9e-38 164.1 316 42.7
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.3e-36 157.1 230 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 9.1e-33 145.2 238 43.3
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.9e-30 137.5 204 41.2
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 1.8e-28 131.0 268 37.3
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.5e-27 125.6 364 38.2
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 3.7e-26 123.2 104 61.5
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.1e-22 111.7 267 33.7
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 3.4e-19 100.1 165 41.2
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.5e-19 99.0 220 40.9
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 9.1e-17 92.0 181 43.1
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 9.1e-17 92.0 88 50.0
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 9.5e-14 82.0 210 34.8
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 2.1e-13 80.9 141 40.4
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.3e-12 77.4 84 53.6
BolC7t41892H Brassica oleracea HOM05D004981 ORTHO05D042093 3.0e-12 77.0 82 58.5
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 4.0e-12 76.6 56 66.1
BraA08t32917Z Brassica rapa HOM05D004981 ORTHO05D005635 1.2e-11 75.1 105 47.6
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 2.8e-10 70.5 71 56.3
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 2.8e-10 70.5 213 28.6
BolC5t29476H Brassica oleracea HOM05D004981 ORTHO05D005635 1.8e-09 67.8 49 65.3
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 4.5e-08 63.2 65 53.8
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.5e-06 57.4 132 37.9


User provided reference genes

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