Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p27440 Brassica napus HOM05D006522 ORTHO05D008183 1.1e-198 696.4 342 100.0
BraA10t44795Z Brassica rapa HOM05D006522 ORTHO05D008183 5.6e-107 391.7 190 98.9
BcaC04g19347 Brassica carinata HOM05D006522 ORTHO05D008183 2.4e-105 386.3 190 97.4
C09p67500 Brassica napus HOM05D006522 ORTHO05D008183 2.4e-105 386.3 190 97.4
BolC9t59510H Brassica oleracea HOM05D006522 ORTHO05D008183 2.4e-105 386.3 190 97.4
BcaB08g37142 Brassica carinata HOM05D006522 ORTHO05D008183 1.2e-101 374.0 190 94.7
Sp6g33330 Schrenkiella parvula HOM05D006522 ORTHO05D008183 2.5e-99 366.3 190 92.6
Carub.0006s0853 Capsella rubella HOM05D006522 ORTHO05D008183 2.0e-96 356.7 190 90.5
Thhalv10014396m.g Eutrema salsugineum HOM05D006522 ORTHO05D008183 1.0e-95 354.4 190 90.0
AL6G20520 Arabidopsis lyrata HOM05D006522 ORTHO05D008183 2.2e-95 353.2 190 90.0
Aa31LG3G17070 Aethionema arabicum HOM05D006522 ORTHO05D008183 5.0e-95 352.1 190 88.4
AT5G10070 Arabidopsis thaliana HOM05D006522 ORTHO05D008183 1.9e-91 340.1 188 88.3
THA.LOC104819310 Tarenaya hassleriana HOM05D006522 ORTHO05D008183 3.6e-85 319.3 190 81.1
Gohir.D03G044300 Gossypium hirsutum HOM05D006522 ORTHO05D008183 1.0e-84 317.8 190 80.5
Gohir.A02G132900 Gossypium hirsutum HOM05D006522 ORTHO05D008183 1.4e-84 317.4 190 80.0
TWI53G0226 Tripterygium wilfordii HOM05D006522 ORTHO05D008183 3.3e-83 312.8 190 77.4
Potri.005G080300 Populus trichocarpa HOM05D006522 ORTHO05D008183 1.4e-81 307.4 191 77.0
Ciclev10027591m.g Citrus clementina HOM05D006522 ORTHO05D008183 4.1e-81 305.8 205 74.1
Duzib187G0580 Durio zibethinus HOM05D006522 ORTHO05D008183 6.9e-81 305.1 190 77.4
Thecc.01G107900 Theobroma cacao HOM05D006522 ORTHO05D008183 4.5e-80 302.4 190 75.8
CSS0003121 Camellia sinensis var. sinensis HOM05D006522 ORTHO05D008183 7.7e-80 301.6 202 72.8
CiPaw.04G095200 Carya illinoinensis HOM05D006522 ORTHO05D008183 1.1e-78 297.7 193 76.2
Eucgr.I00376 Eucalyptus grandis HOM05D006522 ORTHO05D008183 4.2e-78 295.8 194 74.2
Hma1.2p1_0070F.1_g037610 Hydrangea macrophylla HOM05D006522 ORTHO05D008183 5.5e-78 295.4 194 73.7
AUR62004203 Chenopodium quinoa HOM05D006522 ORTHO05D008183 3.6e-77 292.7 191 75.4
CANSAT01G1323 Cannabis sativa HOM05D006522 ORTHO05D008183 4.7e-77 292.4 191 73.8
Sc23g0003650 Simmondsia chinensis HOM05D006522 ORTHO05D008183 6.1e-77 292.0 192 73.4
AUR62013645 Chenopodium quinoa HOM05D006522 ORTHO05D008183 1.0e-76 291.2 191 75.4
Manes.13G077900 Manihot esculenta HOM05D006522 ORTHO05D008183 1.4e-76 290.8 221 67.4
MD15G1329600 Malus domestica HOM05D006522 ORTHO05D008183 1.8e-76 290.4 177 78.5
GSVIVG01022189001 Vitis vinifera HOM05D006522 ORTHO05D008183 3.0e-76 289.7 228 64.9
Rhsim10G0156200 Rhododendron simsii HOM05D006522 ORTHO05D008183 5.2e-76 288.9 225 64.0
RcHm_v2.0_Chr2g0115571 Rosa chinensis HOM05D006522 ORTHO05D008183 5.2e-76 288.9 191 71.7
HanXRQChr14g0446011 Helianthus annuus HOM05D006522 ORTHO05D008183 6.7e-76 288.5 191 72.8
FvH4_1g21690 Fragaria vesca HOM05D006522 ORTHO05D008183 8.8e-76 288.1 180 76.1
Sed0017006 Sechium edule HOM05D006522 ORTHO05D008183 8.8e-76 288.1 190 72.1
Zm00001eb401110 Zea mays HOM05D006522 ORTHO05D008183 8.8e-76 288.1 193 71.5
Ah.05g174330 Amaranthus hybridus HOM05D006522 ORTHO05D008183 1.1e-75 287.7 191 73.8
EL10Ac1g00879 Beta vulgaris HOM05D006522 ORTHO05D008183 1.1e-75 287.7 192 74.5
HPP92_027257 Vanilla planifolia HOM05D006522 ORTHO05D008183 7.4e-75 285.0 195 70.8
Dinv16321 Davidia involucrata HOM05D006522 ORTHO05D008183 9.7e-75 284.6 190 72.6
Nitab4.5_0003396g0010 Nicotiana tabacum HOM05D006522 ORTHO05D008183 1.3e-74 284.3 194 73.2
ECA238G0371 Erigeron canadensis HOM05D006522 ORTHO05D008183 2.2e-74 283.5 218 65.1
PSO675G0908 Papaver somniferum HOM05D006522 ORTHO05D008183 2.2e-74 283.5 196 72.4
PSO541G5899 Papaver somniferum HOM05D006522 ORTHO05D008183 4.8e-74 282.3 195 72.8
ECA238G2930 Erigeron canadensis HOM05D006522 ORTHO05D008183 1.1e-73 281.2 189 72.0
Nitab4.5_0001027g0010 Nicotiana tabacum HOM05D006522 ORTHO05D008183 1.8e-73 280.4 236 61.9
CAN.G1550.13 Capsicum annuum HOM05D006522 ORTHO05D008183 2.4e-73 280.0 194 71.1
Gorai.003G045400 Gossypium raimondii HOM05D006522 ORTHO05D008183 7.0e-73 278.5 190 74.2
Lj4g0021245 Lotus japonicus HOM05D006522 ORTHO05D008183 9.1e-73 278.1 196 67.9
Actinidia28878 Actinidia chinensis HOM05D001075 ORTHO05D008183 1.2e-72 277.7 192 71.4
FAN26G1180 Fragaria x ananassa HOM05D006522 ORTHO05D008183 1.6e-72 277.3 195 70.3
CARHR203220 Cardamine hirsuta HOM05D006522 ORTHO05D008183 3.5e-72 276.2 138 93.5
AUR62013648 Chenopodium quinoa HOM05D006522 ORTHO05D008183 4.5e-72 275.8 177 77.4
VMungo0251G3519 Vigna mungo HOM05D006522 ORTHO05D008183 4.5e-72 275.8 194 69.1
Sopen05g033820 Solanum pennellii HOM05D006522 ORTHO05D008183 1.0e-71 274.6 194 69.1
Os03g0195200 Oryza sativa ssp. japonica HOM05D006522 ORTHO05D008183 1.7e-71 273.9 221 63.3
PGSC0003DMG400023383 Solanum tuberosum HOM05D006522 ORTHO05D008183 1.7e-71 273.9 194 69.1
Cc00_g21690 Coffea canephora HOM05D006522 ORTHO05D008183 2.2e-71 273.5 206 68.9
Psat7g053400 Pisum sativum HOM05D006522 ORTHO05D008183 1.1e-70 271.2 195 67.2
QL06p050567 Quercus lobata HOM05D006522 ORTHO05D008183 1.1e-70 271.2 238 59.7
TPR.G2232 Trifolium pratense HOM05D006522 ORTHO05D008183 1.5e-70 270.8 194 69.1
Phvul.002G262800 Phaseolus vulgaris HOM05D006522 ORTHO05D008183 7.2e-70 268.5 224 61.6
Medtr8g091510 Medicago truncatula HOM05D006522 ORTHO05D008183 9.4e-70 268.1 196 65.8
Ca_17709_v3 Cicer arietinum L. HOM05D006522 ORTHO05D008183 1.2e-69 267.7 197 64.5
MSTRG.23326 Avicennia marina HOM05D006522 ORTHO05D008183 2.7e-69 266.5 159 79.9
SGA_v2.0_scaffold2G01317 Striga asiatica HOM05D006522 ORTHO05D008183 6.1e-69 265.4 156 80.8
Lalb_Chr12g0203641 Lupinus albus HOM05D006522 ORTHO05D008183 8.0e-69 265.0 195 65.1
Glyma.08G139500 Glycine max HOM05D006522 ORTHO05D008183 1.4e-68 264.2 147 79.6
Glyma.05G181800 Glycine max HOM05D006522 ORTHO05D008183 1.8e-68 263.8 148 79.7
TAR376G0333 Trochodendron aralioides HOM05D006522 ORTHO05D008183 2.3e-68 263.5 203 68.5
MELO3C017578.2 Cucumis melo HOM05D006522 ORTHO05D008183 5.2e-68 262.3 235 59.6
Atru.chr4.281 Acer truncatum HOM05D006522 ORTHO05D008183 2.6e-67 260.0 190 68.4
ATR0564G484 Amborella trichopoda HOM05D006522 ORTHO05D008183 1.7e-66 257.3 192 66.7
Prupe.6G178600 Prunus persica HOM05D006522 ORTHO05D008183 2.2e-66 256.9 138 84.8
Migut.H02394 Erythranthe guttata HOM05D006522 ORTHO05D008183 1.1e-65 254.6 203 65.5
Oeu028389.1 Olea europaea HOM05D006522 ORTHO05D008183 1.4e-65 254.2 144 81.2
arahy.Tifrunner.gnm1.ann1.8IYW0J Arachis hypogaea HOM05D006522 ORTHO05D008183 1.8e-65 253.8 250 53.2
PGR004G1063 Punica granatum HOM05D006522 ORTHO05D008183 2.4e-65 253.4 191 66.5
Sabra05G0065900 Salix brachista HOM05D006522 ORTHO05D008183 1.6e-64 250.8 191 66.0
Nn5g28991 Nelumbo nucifera HOM05D006522 ORTHO05D008183 3.2e-62 243.0 195 64.6
Hma1.2p1_0070F.1_g037620 Hydrangea macrophylla HOM05D006522 ORTHO05D008183 2.1e-61 240.4 194 63.9
Mapoly0168s0016 Marchantia polymorpha HOM05D006522 ORTHO05D008183 2.7e-61 240.0 194 62.9
FAN19G2878 Fragaria x ananassa HOM05D006522 ORTHO05D008183 8.8e-60 235.0 180 66.1
Lsat_1_v5_gn_2_67761 Lactuca sativa HOM05D006522 ORTHO05D008183 1.5e-59 234.2 161 72.0
vmacro12933 Vaccinium macrocarpon HOM05D006522 ORTHO05D008183 7.5e-59 231.9 191 62.3
Pp3c17_17150 Physcomitrium patens HOM05D006522 ORTHO05D008183 4.8e-58 229.2 210 57.1
COL.COLO4_11046 Corchorus olitorius HOM05D006522 ORTHO05D008183 1.4e-57 227.6 152 72.4
SalBow3G1116 Salvia bowleyana HOM05D006522 ORTHO05D008183 5.4e-57 225.7 205 59.0
Aqoxy6G00537 Aquilegia oxysepala HOM05D006522 ORTHO05D008183 1.3e-55 221.1 118 85.6
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 4.2e-54 216.1 189 55.0
unitig_736.g22572 Utricularia gibba HOM05D006522 ORTHO05D008183 9.5e-54 214.9 164 66.5
CsaV3_UNG186480 Cucumis sativus L. HOM05D006522 ORTHO05D008183 2.8e-53 213.4 124 78.2
arahy.Tifrunner.gnm1.ann1.2EL0K0 Arachis hypogaea HOM05D006522 ORTHO05D008183 4.0e-52 209.5 116 81.9
SMO139G0021 Selaginella moellendorffii HOM05D006522 ORTHO05D008183 1.5e-51 207.6 138 67.4
BcaB08g37140 Brassica carinata HOM05D006522 ORTHO05D008183 2.0e-51 207.2 103 94.2
MCO11G860 Micromonas commoda HOM05D006522 ORTHO05D008183 3.1e-49 199.9 144 59.7
Lj2A556G28 Lonicera japonica HOM05D006522 ORTHO05D008183 5.4e-49 199.1 163 63.2
Cre17.g698950 Chlamydomonas reinhardtii HOM05D006522 ORTHO05D008183 2.7e-48 196.8 193 50.3
Cfa002723 Carpinus fangiana HOM05D006522 ORTHO05D008183 5.9e-48 195.7 114 80.7
Haze_26963 Corylus avellana HOM05D006522 ORTHO05D008183 2.9e-47 193.4 139 59.7
PRCOL_00002914 Prasinoderma coloniale HOM05D006522 ORTHO05D008183 1.1e-46 191.4 142 62.7
Psat7g089320 Pisum sativum HOM05D006522 ORTHO05D008183 3.0e-44 183.3 118 73.7
Haze_24999 Corylus avellana HOM05D006522 ORTHO05D008183 2.3e-39 167.2 190 51.6
ClCG09G014260 Citrullus lanatus HOM05D006522 ORTHO05D008183 2.1e-37 160.6 207 45.9
BraA10t44796Z Brassica rapa HOM05D006522 ORTHO05D107907 1.4e-36 157.9 76 97.4
Cfa022135 Carpinus fangiana HOM05D006522 ORTHO05D008183 1.1e-33 148.3 181 39.8
AT5G10060 Arabidopsis thaliana HOM05D001562 ORTHO05D001437 6.4e-26 122.5 85 71.8
AL6G20510 Arabidopsis lyrata HOM05D001562 ORTHO05D001437 1.1e-25 121.7 86 70.9
CDE10G0337 Ceratophyllum demersum HOM05D006522 ORTHO05D008183 2.7e-24 117.1 145 49.7
Thhalv10013419m.g Eutrema salsugineum HOM05D001562 ORTHO05D001437 6.0e-24 115.9 88 70.5
CARHR203230 Cardamine hirsuta HOM05D001562 ORTHO05D001437 8.6e-23 112.1 86 70.9
SEGI_11019 Sequoiadendron giganteum HOM05D006522 ORTHO05D008183 2.5e-22 110.5 56 85.7
MD01G1023100 Malus domestica HOM05D006522 ORTHO05D008183 3.3e-22 110.2 57 87.7
Carub.0006s0852 Capsella rubella HOM05D001562 ORTHO05D001437 1.2e-21 108.2 86 67.4
C02p04230 Brassica napus HOM05D001562 ORTHO05D001437 8.9e-20 102.1 134 49.3
SHI11626 Sapria himalayana HOM05D006522 ORTHO05D008183 5.8e-19 99.4 59 72.9
BcaC03g13291 Brassica carinata HOM05D001562 ORTHO05D001437 1.3e-18 98.2 134 47.8
SEGI_36547 Sequoiadendron giganteum HOM05D006522 ORTHO05D008183 1.3e-18 98.2 90 54.4
MD01G1023200 Malus domestica HOM05D006522 ORTHO05D008183 4.9e-18 96.3 59 74.6
AUR62004200 Chenopodium quinoa HOM05D006522 ORTHO05D008183 9.2e-17 92.0 144 42.4
A02p00310 Brassica napus HOM05D000868 ORTHO05D000711 2.3e-15 87.4 81 56.8
BraA02t05016Z Brassica rapa HOM05D000868 ORTHO05D000711 2.3e-15 87.4 81 56.8
SpUn0247_0010 Schrenkiella parvula HOM05D001562 ORTHO05D001437 3.9e-15 86.7 87 54.0
Aqoxy6G00538 Aquilegia oxysepala HOM05D006522 ORTHO05D008183 1.5e-14 84.7 84 54.8
Sp6g33340 Schrenkiella parvula HOM05D001562 ORTHO05D001437 9.0e-12 75.5 41 85.4
BraA03t09783Z Brassica rapa HOM05D001562 ORTHO05D001437 1.5e-11 74.7 134 38.1
Sp2g28270 Schrenkiella parvula HOM05D001562 ORTHO05D001437 1.3e-10 71.6 133 38.3
Thhalv10004419m.g Eutrema salsugineum HOM05D001562 ORTHO05D001437 3.2e-09 67.0 73 56.2
BcaB01g05549 Brassica carinata HOM05D001562 ORTHO05D001437 5.4e-09 66.2 44 77.3
A03p04400 Brassica napus HOM05D000868 ORTHO05D000711 1.2e-08 65.1 44 75.0
BolC3t13018H Brassica oleracea HOM05D001562 ORTHO05D001437 4.6e-08 63.2 44 72.7
CDE10G0344 Ceratophyllum demersum HOM05D006522 ORTHO05D008183 6.0e-08 62.8 78 47.4
Carub.0008s2603 Capsella rubella HOM05D001562 ORTHO05D001437 1.1e-06 58.5 78 46.2
MD01G1022500 Malus domestica HOM05D001562 ORTHO05D001437 1.5e-06 58.2 101 36.6
THA.LOC104799150 Tarenaya hassleriana HOM05D001562 ORTHO05D001437 1.5e-06 58.2 42 66.7
THA.LOC104818483 Tarenaya hassleriana HOM05D001562 ORTHO05D001437 1.5e-06 58.2 77 44.2
AT5G65180 Arabidopsis thaliana HOM05D001562 ORTHO05D001437 1.9e-06 57.8 42 69.0
CARHR279100 Cardamine hirsuta HOM05D001562 ORTHO05D001437 2.5e-06 57.4 43 67.4
Eucgr.L02916 Eucalyptus grandis HOM05D006522 ORTHO05D008183 2.5e-06 57.4 27 92.6
FvH4_1g21760 Fragaria vesca HOM05D001562 ORTHO05D001437 3.3e-06 57.0 98 39.8
FAN23G3062 Fragaria x ananassa HOM05D001562 ORTHO05D001437 3.3e-06 57.0 98 39.8
Aqoxy6G00533 Aquilegia oxysepala HOM05D001562 ORTHO05D001437 4.3e-06 56.6 87 41.4
FAN28G2169 Fragaria x ananassa HOM05D001562 ORTHO05D001437 7.3e-06 55.8 97 38.1
FAN26G3173 Fragaria x ananassa HOM05D001562 ORTHO05D001437 9.6e-06 55.5 98 39.8


User provided reference genes

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