Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.1e-229 799.7 408 100.0
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 8.0e-217 756.9 409 96.1
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 2.8e-206 721.8 408 91.4
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 2.7e-204 715.3 408 91.2
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.3e-203 713.0 408 90.7
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 4.3e-194 681.4 415 86.7
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 2.1e-180 636.0 408 79.7
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 3.9e-179 631.7 406 80.8
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 2.4e-160 569.3 413 74.1
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 3.5e-148 528.9 414 67.6
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 6.0e-148 528.1 308 89.0
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.9e-134 482.6 311 82.0
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.6e-124 450.3 301 74.4
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.1e-123 445.3 292 76.4
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.1e-120 437.6 409 57.2
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 3.4e-119 432.6 410 55.6
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 4.5e-119 432.2 412 55.8
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 2.2e-118 429.9 408 53.2
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.9e-118 429.5 410 55.9
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.0e-118 428.7 411 55.2
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 8.5e-118 427.9 408 52.9
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.1e-117 427.6 413 56.7
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 4.2e-117 425.6 409 55.3
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 7.2e-117 424.9 411 54.5
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.2e-116 424.1 414 55.6
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.6e-116 423.7 411 56.2
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 2.7e-116 422.9 291 76.3
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.7e-116 422.9 412 55.6
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.4e-115 420.6 409 55.5
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 3.9e-115 419.1 412 52.9
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 6.7e-115 418.3 409 53.5
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.5e-114 417.2 412 53.6
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 3.3e-114 416.0 413 55.4
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 4.4e-114 415.6 412 52.7
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 5.7e-114 415.2 417 54.4
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 2.2e-113 413.3 419 54.2
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 3.1e-112 409.5 410 52.7
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 5.3e-112 408.7 415 53.0
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 4.5e-111 405.6 417 52.8
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 4.5e-111 405.6 411 51.8
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 5.9e-111 405.2 411 51.6
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 1.0e-110 404.4 411 56.2
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.7e-110 403.7 428 52.8
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 3.8e-110 402.5 413 53.3
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 5.0e-110 402.1 412 53.6
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.4e-109 400.6 412 50.5
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.9e-109 400.2 439 51.0
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.5e-109 399.8 417 52.3
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 4.2e-109 399.1 411 51.1
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 3.6e-108 396.0 360 58.6
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 2.3e-107 393.3 457 48.4
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 1.3e-105 387.5 407 50.4
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.2e-105 386.7 412 51.5
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 2.2e-105 386.7 417 53.7
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 2.8e-105 386.3 372 54.0
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 4.1e-104 382.5 410 50.5
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.2e-103 380.9 419 49.4
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 3.8e-102 375.9 443 47.9
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 5.0e-102 375.6 415 51.1
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.1e-100 370.2 450 46.4
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 8.0e-100 368.2 404 50.7
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.0e-99 366.3 410 49.5
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 4.4e-98 362.5 406 50.0
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.7e-97 360.5 430 47.4
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 8.3e-97 358.2 400 51.5
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 4.1e-96 355.9 485 43.5
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 7.0e-96 355.1 529 42.0
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 5.9e-95 352.1 412 50.2
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 7.7e-95 351.7 260 72.7
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 2.7e-92 343.2 295 59.3
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.2e-89 333.6 295 58.6
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 6.6e-86 322.0 411 47.9
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 6.6e-86 322.0 409 44.3
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 5.5e-85 318.9 412 43.9
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.8e-83 312.0 296 54.7
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 6.8e-83 312.0 417 43.9
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 7.5e-82 308.5 460 43.5
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.8e-82 308.1 283 58.3
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.9e-78 296.6 324 50.9
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 2.9e-78 296.6 314 52.5
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.9e-77 293.9 307 53.4
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.5e-77 293.5 418 41.9
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.6e-77 292.4 318 50.9
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 2.1e-76 290.4 315 47.6
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 4.7e-76 289.3 332 49.7
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.0e-75 288.1 446 40.8
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 2.3e-75 287.0 320 49.1
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 2.6e-74 283.5 319 48.9
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 3.7e-73 279.6 337 48.1
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 8.3e-73 278.5 329 48.9
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 1.1e-72 278.1 319 49.2
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 6.0e-71 272.3 464 37.9
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 6.2e-68 262.3 272 51.5
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.0e-66 257.3 258 52.7
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 9.8e-66 255.0 571 34.3
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 2.4e-64 250.4 302 46.0
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 9.2e-64 248.4 420 40.0
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.2e-63 248.1 313 46.0
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.7e-63 246.9 434 39.9
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 5.1e-62 242.7 294 44.9
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.9e-58 228.4 148 75.0
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 1.2e-55 221.5 259 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.0e-54 218.4 321 43.6
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 4.3e-53 213.0 323 39.6
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 6.8e-51 205.7 183 56.8
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.1e-48 198.4 404 33.7
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 7.8e-47 192.2 285 41.1
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.9e-41 172.9 230 44.3
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.1e-39 167.5 375 32.5
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 2.5e-37 160.6 85 91.8
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 3.8e-33 146.7 269 34.9
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.9e-32 144.4 309 34.6
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 9.3e-32 142.1 93 71.0
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 3.5e-31 140.2 94 69.1
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 4.3e-29 133.3 79 84.8
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.1e-21 108.6 77 64.9
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.3e-17 95.1 116 42.2
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 3.8e-17 93.6 65 66.2
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 6.7e-14 82.8 64 59.4
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.5e-13 81.6 219 31.5
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.9e-13 81.3 61 60.7
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 8.2e-12 75.9 81 46.9
Sp1g28000 Schrenkiella parvula HOM05D006096 ORTHO05D007775 3.1e-11 73.9 107 44.9
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.1e-11 73.6 242 28.1
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.1e-08 65.5 69 49.3
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.5e-08 63.2 80 40.0
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.6e-07 60.5 102 36.3
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 4.6e-07 60.1 59 62.7
Aa31LG7G15400 Aethionema arabicum HOM05D006096 ORTHO05D009377 1.4e-06 58.5 93 43.0


User provided reference genes

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