Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 6.8e-279 963.4 493 100.0
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.2e-269 931.8 493 97.4
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.1e-250 867.5 499 90.4
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 4.3e-249 864.4 502 91.0
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 3.6e-248 861.3 501 90.2
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 6.7e-194 681.0 505 70.1
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 5.3e-183 644.8 513 66.5
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.0e-181 640.6 509 66.2
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 3.6e-179 632.1 511 65.4
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 6.7e-178 627.9 514 66.0
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.1e-143 512.3 520 55.6
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.7e-75 286.6 531 37.9
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 5.9e-73 279.3 521 37.6
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.3e-72 278.1 403 42.9
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 6.5e-72 275.8 495 37.2
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.4e-71 274.6 403 42.7
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 3.2e-71 273.5 412 41.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.2e-71 272.3 489 36.8
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.1e-70 270.8 533 36.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.1e-70 270.8 418 40.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.6e-68 263.8 498 38.2
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.8e-67 260.4 524 35.7
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 5.9e-65 252.7 384 41.9
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 5.0e-64 249.6 414 37.2
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.1e-63 248.4 469 35.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.5e-63 247.3 513 35.9
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 3.2e-63 246.9 519 35.5
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.5e-63 246.1 512 36.1
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 7.2e-63 245.7 519 35.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.1e-62 244.2 494 35.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 4.7e-62 243.0 491 36.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 6.1e-62 242.7 419 36.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.4e-61 241.5 378 41.3
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.3e-61 240.7 494 35.0
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 3.0e-61 240.4 492 35.6
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.2e-60 238.4 556 32.4
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.5e-60 238.0 520 35.4
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.5e-60 238.0 522 34.3
BcaB06g29645 Brassica carinata HOM05D003538 ORTHO05D018603 2.8e-59 233.8 243 55.6
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 4.8e-59 233.0 479 33.8
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.2e-57 228.4 513 37.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.6e-57 228.0 505 34.7
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 5.9e-57 226.1 542 33.6
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.7e-57 225.7 497 36.2
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.9e-56 223.8 537 34.5
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.5e-55 220.7 510 33.5
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 2.5e-55 220.7 501 34.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.2e-55 220.3 499 34.5
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.2e-54 218.4 387 37.0
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 6.1e-54 216.1 481 33.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.3e-53 214.2 497 33.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 4.0e-53 213.4 427 35.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.5e-52 211.5 504 33.5
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 9.8e-52 208.8 526 30.4
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.3e-51 208.4 518 32.2
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-50 205.3 593 30.4
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 7.0e-50 202.6 529 34.4
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.2e-49 201.8 490 33.1
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.6e-49 201.4 492 31.9
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.0e-49 201.1 401 36.2
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 5.9e-49 199.5 184 59.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 7.7e-49 199.1 505 30.9
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.1e-47 195.3 491 32.4
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.5e-47 194.1 520 33.1
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.5e-47 194.1 520 33.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.3e-47 193.7 491 32.4
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.2e-47 193.4 443 35.2
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.2e-47 193.4 515 30.1
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 5.5e-47 193.0 446 31.2
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.1e-46 191.0 437 32.7
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.7e-46 189.9 511 30.7
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 8.0e-46 189.1 410 32.0
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.0e-45 188.7 508 32.9
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 8.9e-45 185.7 497 29.8
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 4.4e-44 183.3 425 31.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 7.5e-44 182.6 449 31.6
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.3e-43 181.8 398 32.2
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.7e-43 181.4 528 29.0
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.7e-43 181.4 505 30.5
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.2e-43 181.0 488 28.1
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.8e-42 177.9 408 31.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.4e-42 177.6 530 29.6
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 7.0e-42 176.0 495 27.5
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 7.0e-42 176.0 447 29.1
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 9.2e-42 175.6 503 30.4
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.5e-41 173.7 491 30.8
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 5.9e-41 172.9 483 30.6
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.3e-40 171.8 485 29.9
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-40 171.8 464 29.5
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-40 171.8 464 29.5
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.3e-40 171.8 446 30.7
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.7e-40 171.4 478 30.1
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.9e-40 170.2 447 29.3
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 5.0e-40 169.9 379 32.5
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 6.6e-40 169.5 395 30.6
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 8.6e-40 169.1 378 33.1
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 3.3e-39 167.2 386 32.1
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 4.3e-39 166.8 422 32.9
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 4.3e-39 166.8 462 29.4
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.6e-38 164.9 476 29.0
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 3.6e-38 163.7 510 29.6
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.0e-37 162.2 415 29.2
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.8e-37 161.4 366 33.3
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 3.1e-37 160.6 379 29.8
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 4.0e-37 160.2 410 30.5
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.2e-37 159.8 472 28.0
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 8.9e-37 159.1 393 30.8
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.6e-36 157.5 258 39.9
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 3.4e-36 157.1 477 28.7
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.4e-36 157.1 499 27.3
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 5.8e-36 156.4 410 30.0
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 5.8e-36 156.4 412 29.9
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.2e-35 154.5 403 29.5
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.9e-35 154.1 386 31.3
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.9e-35 154.1 482 26.3
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.4e-34 151.0 517 27.1
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 9.2e-34 149.1 455 27.0
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.6e-33 148.3 389 31.1
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 2.0e-33 147.9 489 26.6
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.7e-33 147.5 510 26.1
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.5e-33 147.1 507 27.0
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 4.6e-33 146.7 495 27.5
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.6e-33 146.7 455 27.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.3e-32 144.4 388 29.1
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.3e-32 144.4 464 27.8
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 8.6e-32 142.5 387 29.7
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.5e-31 141.7 389 30.8
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.5e-31 141.7 480 26.2
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.6e-30 138.3 459 29.6
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.8e-30 137.5 508 24.8
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.8e-30 137.5 386 29.5
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.8e-29 134.8 490 28.0
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.1e-29 134.0 440 28.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 9.8e-28 129.0 468 26.3
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-27 128.3 425 28.2
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.7e-27 128.3 265 32.8
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 4.9e-27 126.7 387 27.1
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.1e-26 123.6 250 32.8
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 7.1e-26 122.9 308 30.5
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.7e-25 120.9 268 32.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.7e-25 120.9 268 32.8
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.0e-24 119.0 398 26.9
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 3.9e-24 117.1 455 24.0
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.6e-24 115.9 411 29.2
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.5e-23 115.2 484 24.4
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 2.5e-23 114.4 372 27.2
Sp6g31820 Schrenkiella parvula HOM05D003538 ORTHO05D004376 3.3e-23 114.0 72 81.9
A02p40920 Brassica napus HOM05D003538 ORTHO05D018603 5.6e-23 113.2 63 82.5
A08p26910 Brassica napus HOM05D003538 ORTHO05D018603 5.6e-23 113.2 63 82.5
C02p02900 Brassica napus HOM05D003538 ORTHO05D018603 5.6e-23 113.2 63 82.5
C04p65130 Brassica napus HOM05D003538 ORTHO05D018603 5.6e-23 113.2 63 82.5
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 4.7e-22 110.2 274 32.1
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 2.3e-21 107.8 254 32.3
A02p40910 Brassica napus HOM05D003538 ORTHO05D027818 4.0e-21 107.1 78 71.8
A09p68670 Brassica napus HOM05D003538 ORTHO05D027818 4.0e-21 107.1 78 71.8
C08p16660 Brassica napus HOM05D003538 ORTHO05D027818 4.0e-21 107.1 78 71.8
BraA06t23891Z Brassica rapa HOM05D003538 ORTHO05D027818 4.0e-21 107.1 78 71.8
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 6.8e-21 106.3 231 31.6
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.9e-19 100.1 255 29.8
A05p29870 Brassica napus HOM05D003538 ORTHO05D018603 1.6e-17 95.1 51 86.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 7.8e-17 92.8 269 27.5
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.5e-15 87.8 228 27.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.4e-13 81.3 196 31.1
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.4e-13 81.3 243 25.9
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 4.0e-13 80.5 184 30.4
A09p68660 Brassica napus HOM05D003538 ORTHO05D018603 1.7e-11 75.1 37 91.9
C08p16650 Brassica napus HOM05D003538 ORTHO05D018603 1.7e-11 75.1 37 91.9
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.8e-11 73.9 203 32.0
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.9e-10 71.6 171 29.8
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.4e-10 71.2 212 27.8
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.0e-08 65.9 155 28.4
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-07 62.4 192 26.0
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.3e-07 60.8 105 29.5
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.6e-06 58.5 91 34.1


User provided reference genes

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