Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 9.6e-107 390.2 199 100.0
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 4.7e-106 387.9 199 99.5
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.8e-105 386.0 199 98.5
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 4.0e-105 384.8 199 98.5
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 8.4e-103 377.1 199 96.0
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 3.2e-102 375.2 199 95.0
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 4.2e-102 374.8 199 95.5
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.6e-101 372.9 199 94.5
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 6.0e-101 370.9 199 94.5
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 8.7e-100 367.1 199 94.0
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 8.7e-100 367.1 199 94.0
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 6.2e-98 360.9 199 93.5
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 8.1e-98 360.5 200 93.0
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 9.0e-97 357.1 199 92.0
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.0e-96 355.9 200 92.0
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.0e-89 331.6 199 84.4
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 7.6e-88 327.4 199 84.9
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.7e-85 318.9 201 81.6
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 6.7e-84 314.3 181 89.5
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.6e-83 311.2 200 78.5
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 7.4e-83 310.8 201 79.6
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 9.6e-83 310.5 201 79.1
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.3e-82 310.1 201 79.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.6e-82 309.7 201 78.1
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.1e-82 309.3 199 77.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.1e-82 309.3 199 78.9
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.1e-82 309.3 200 78.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 2.1e-82 309.3 199 78.9
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.8e-82 308.9 199 77.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.7e-82 308.5 199 76.9
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.8e-82 308.1 199 79.4
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 6.2e-82 307.8 199 77.4
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.1e-81 307.0 199 77.4
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.8e-81 306.2 201 75.1
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.8e-81 306.2 199 77.9
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.8e-81 306.2 197 78.7
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 3.1e-81 305.4 198 76.8
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.3e-81 304.7 197 78.2
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 9.0e-81 303.9 199 77.4
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.0e-81 303.9 201 77.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.0e-81 303.9 201 77.1
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 9.0e-81 303.9 200 77.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.2e-80 303.5 199 76.9
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.2e-80 303.5 199 76.9
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 77.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 76.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 76.4
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 76.4
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.6e-80 302.4 199 77.9
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.5e-80 301.6 200 78.5
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 5.8e-80 301.2 199 76.4
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 7.6e-80 300.8 199 75.9
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 7.6e-80 300.8 199 75.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.0e-79 300.4 199 75.4
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.0e-79 300.4 199 74.9
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.2e-79 299.3 199 77.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.2e-79 299.3 199 76.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.9e-79 298.9 199 74.9
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.8e-79 298.5 199 74.4
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 3.8e-79 298.5 199 75.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 3.8e-79 298.5 199 73.4
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.5e-79 297.7 199 74.4
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 6.5e-79 297.7 199 73.9
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.5e-79 297.7 201 74.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 8.4e-79 297.4 199 77.4
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 8.4e-79 297.4 197 75.1
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.4e-78 296.6 199 74.4
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.5e-78 295.8 199 73.4
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 5.5e-78 294.7 197 74.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 5.5e-78 294.7 199 72.9
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 7.1e-78 294.3 199 74.4
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 9.3e-78 293.9 199 74.4
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.3e-78 293.9 200 74.5
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.3e-78 293.9 199 73.9
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.2e-77 293.5 188 78.7
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.2e-77 293.5 201 74.6
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.6e-77 293.1 201 74.6
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.1e-77 292.7 197 76.1
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 2.7e-77 292.4 199 73.4
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.7e-77 292.4 199 75.4
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.7e-77 292.4 201 72.6
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.7e-77 292.4 199 72.9
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.5e-77 292.0 197 74.1
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.5e-77 292.0 197 74.1
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 4.6e-77 291.6 197 74.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.6e-77 291.6 200 72.5
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 4.6e-77 291.6 204 71.6
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.0e-77 291.2 199 74.4
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.0e-77 291.2 199 74.9
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 7.9e-77 290.8 197 73.6
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 7.9e-77 290.8 197 73.6
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.9e-77 290.8 197 72.6
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 7.9e-77 290.8 223 70.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.0e-76 290.4 197 74.1
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.3e-76 290.0 197 72.6
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.3e-76 289.3 181 80.1
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.3e-76 289.3 197 74.1
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 5.1e-76 288.1 199 73.4
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 5.1e-76 288.1 197 73.6
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 8.7e-76 287.3 201 71.6
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 8.7e-76 287.3 200 73.0
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 3.3e-75 285.4 201 73.1
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.7e-75 284.6 205 71.2
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.6e-74 283.1 209 69.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 4.8e-74 281.6 199 70.4
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 4.8e-74 281.6 197 71.6
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 4.8e-74 281.6 197 70.6
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 3.1e-73 278.9 199 69.3
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 3.1e-73 278.9 199 71.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 5.3e-73 278.1 206 69.4
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.9e-73 277.7 220 65.5
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 9.0e-73 277.3 200 73.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.0e-73 277.3 213 66.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 9.0e-73 277.3 199 71.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.0e-72 276.2 183 77.0
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.4e-72 275.4 213 70.4
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.4e-72 275.4 215 67.9
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 5.9e-72 274.6 199 70.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 2.2e-71 272.7 198 67.7
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 6.5e-71 271.2 197 68.0
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.1e-70 270.4 199 70.9
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.4e-70 270.0 180 75.6
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 5.5e-70 268.1 199 69.8
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.7e-69 265.8 201 70.6
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.6e-69 265.4 180 73.9
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.0e-68 263.8 248 58.5
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.3e-68 263.5 181 74.0
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 3.0e-68 262.3 198 64.6
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 8.7e-68 260.8 197 65.5
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 3.7e-66 255.4 194 67.0
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 8.2e-66 254.2 233 63.1
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 9.1e-65 250.8 197 67.5
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 9.1e-65 250.8 200 63.0
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 9.1e-65 250.8 182 70.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.5e-64 250.0 204 65.2
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.0e-63 247.3 199 65.3
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.9e-63 245.7 220 60.5
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.6e-61 240.0 194 59.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.6e-61 238.8 188 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 2.3e-60 236.1 183 63.4
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.7e-55 219.9 180 65.0
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 6.5e-55 218.0 188 70.2
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.4e-54 216.9 182 65.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.5e-54 216.1 199 57.8
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.6e-53 213.4 199 58.8
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 3.9e-52 208.8 154 72.7
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 4.7e-45 185.3 120 80.0
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 6.1e-45 184.9 121 74.4
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.9e-38 163.3 97 85.6
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.2e-38 162.5 94 86.2
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.2e-37 160.6 96 85.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.8e-36 156.8 202 53.5
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.7e-32 142.9 211 48.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 5.9e-32 141.7 102 69.6
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 8.8e-28 127.9 70 88.6
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.7e-26 123.6 79 72.2
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.4e-25 119.8 199 46.7
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 4.1e-25 119.0 110 61.8
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 7.0e-25 118.2 71 70.4
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 5.0e-23 112.1 199 45.2
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 8.6e-23 111.3 198 37.9
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 6.1e-21 105.1 110 50.0
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.8e-20 103.6 98 61.2
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-17 93.2 76 65.8
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 4.6e-16 89.0 65 67.7
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 5.0e-15 85.5 62 62.9
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.3e-14 82.8 62 61.3
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-13 80.9 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.1e-13 80.1 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 5.8e-11 72.0 59 62.7
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 7.5e-11 71.6 173 31.8
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.2e-09 66.2 70 54.3


User provided reference genes

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