Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 5.8e-120 434.5 262 100.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 8.7e-116 420.6 263 96.6
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.9e-111 405.6 261 93.9
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-110 403.3 261 93.5
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.4e-97 359.4 261 73.9
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 4.2e-94 348.6 265 83.4
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 7.2e-94 347.8 261 72.0
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.1e-89 332.4 260 71.2
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 5.9e-88 328.2 269 77.3
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.6e-85 320.1 265 78.5
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.1e-85 318.2 261 70.1
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.5e-83 313.5 199 80.4
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 8.2e-82 307.8 261 69.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.3e-81 305.1 262 64.9
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 4.4e-75 285.4 240 71.7
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.3e-74 283.9 263 62.7
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 7.0e-73 278.1 247 67.6
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 9.1e-73 277.7 258 70.2
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.6e-72 276.9 266 65.0
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 5.9e-72 275.0 266 64.3
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 5.9e-72 275.0 266 64.3
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.3e-71 273.9 266 63.9
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.3e-71 273.9 266 63.9
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.5e-70 269.6 189 72.5
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 4.4e-67 258.8 246 69.5
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.7e-64 249.6 265 70.6
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 5.2e-60 235.3 206 70.9
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 5.2e-60 235.3 252 54.4
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.5e-59 233.8 265 55.8
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 2.0e-59 233.4 268 51.1
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 4.4e-59 232.3 264 50.4
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 4.8e-58 228.8 264 50.4
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.4e-57 227.3 245 51.8
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.8e-57 226.9 239 51.5
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.4e-57 226.5 270 52.6
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 2.4e-57 226.5 272 53.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 3.1e-57 226.1 259 55.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 9.1e-57 224.6 227 53.3
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.2e-56 224.2 254 51.6
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.7e-56 223.0 261 60.5
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.7e-56 223.0 279 55.6
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 4.5e-56 222.2 237 54.0
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 4.5e-56 222.2 227 57.3
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.9e-56 221.9 278 48.9
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 5.9e-56 221.9 265 49.8
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 7.7e-56 221.5 251 52.6
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.3e-55 220.7 254 50.8
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.3e-55 219.9 207 66.7
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.9e-55 219.5 246 53.7
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 3.8e-55 219.2 242 54.5
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 5.0e-55 218.8 226 54.0
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 5.0e-55 218.8 254 51.6
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 5.0e-55 218.8 245 60.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 8.6e-55 218.0 236 54.7
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 8.6e-55 218.0 245 60.0
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.1e-54 217.6 236 53.8
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.5e-54 217.2 258 51.6
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.9e-54 216.9 261 48.3
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.5e-54 216.5 269 59.9
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.5e-54 216.5 243 51.0
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.5e-54 216.5 257 49.4
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.3e-54 216.1 224 62.9
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 3.3e-54 216.1 261 49.4
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 5.5e-54 215.3 228 53.5
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 5.5e-54 215.3 257 49.4
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 7.2e-54 214.9 257 49.0
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.5e-54 214.5 242 52.9
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.2e-53 214.2 266 46.6
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.6e-53 213.8 236 53.0
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.6e-53 213.8 260 50.8
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.1e-53 213.4 246 62.6
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.1e-53 213.4 262 50.4
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.8e-53 213.0 239 51.5
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.8e-53 213.0 221 57.5
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.7e-53 212.2 258 49.2
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 8.0e-53 211.5 230 53.0
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.0e-52 211.1 219 53.4
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.4e-52 210.7 234 51.3
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.8e-52 210.3 244 51.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.3e-52 209.9 254 48.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 5.2e-52 208.8 253 47.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.2e-52 208.8 222 51.8
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 6.8e-52 208.4 226 54.9
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 6.8e-52 208.4 247 55.5
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 8.9e-52 208.0 230 59.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.5e-51 207.2 238 50.4
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.6e-51 206.5 235 51.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 3.4e-51 206.1 226 53.1
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.4e-51 206.1 218 52.3
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.4e-51 205.7 219 52.5
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-50 204.1 234 53.8
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.3e-50 204.1 256 50.4
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.3e-50 204.1 256 46.1
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.7e-50 203.8 253 49.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.7e-50 203.8 237 52.7
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.2e-50 203.4 219 51.1
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.8e-50 203.0 253 49.0
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 2.8e-50 203.0 298 55.7
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 3.7e-50 202.6 277 58.1
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 6.3e-50 201.8 223 55.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 6.3e-50 201.8 223 55.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-49 201.1 160 63.1
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 3.2e-49 199.5 254 46.9
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.2e-48 197.6 228 49.1
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.6e-48 197.2 238 48.7
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.6e-48 197.2 253 46.2
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.0e-48 196.8 277 46.2
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 7.8e-48 194.9 237 51.5
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 6.6e-47 191.8 233 49.8
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 8.6e-47 191.4 242 43.4
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.5e-46 189.9 206 53.9
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.5e-46 189.9 242 46.3
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.3e-44 183.3 146 63.0
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.3e-44 183.3 222 59.0
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 3.1e-44 183.0 163 57.1
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.5e-43 180.6 187 55.1
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 9.8e-43 177.9 271 45.8
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 9.8e-43 177.9 212 51.4
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.7e-42 177.2 227 45.8
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 3.7e-42 176.0 256 44.1
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 4.9e-42 175.6 242 45.0
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 8.3e-42 174.9 158 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.7e-40 169.9 149 53.7
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 3.5e-40 169.5 198 55.1
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.3e-39 167.5 196 52.0
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.7e-39 167.2 144 54.9
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.5e-38 164.1 195 49.7
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.5e-38 164.1 249 38.6
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 7.3e-38 161.8 149 50.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 7.3e-38 161.8 115 63.5
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 6.2e-37 158.7 241 41.5
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.1e-36 157.9 195 48.2
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.6e-35 153.3 197 49.2
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.1e-33 146.0 76 81.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.1e-33 146.0 198 52.0
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 6.0e-32 142.1 149 48.3
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.0e-31 141.4 157 63.1
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 6.2e-29 132.1 168 44.0
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.4e-28 131.0 94 64.9
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.4e-27 126.3 198 40.4
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.7e-26 124.0 121 50.4
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 3.7e-26 122.9 95 57.9
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.1e-25 118.6 63 79.4
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 6.6e-23 112.1 168 39.3
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 3.1e-20 103.2 105 48.6
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.3e-18 97.8 158 46.2
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.2e-16 91.3 155 50.3
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 2.1e-16 90.5 156 41.7
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 3.5e-16 89.7 80 52.5
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 3.5e-16 89.7 163 43.6
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.6e-16 89.4 158 48.7
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.0e-15 88.2 149 41.6
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-14 84.7 162 44.4
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.1e-14 84.7 109 37.6
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 2.5e-14 83.6 92 58.7
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.4e-12 77.8 255 29.4
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.0e-12 76.3 67 58.2
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 5.3e-12 75.9 90 48.9
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 5.3e-12 75.9 93 51.6
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 9.0e-12 75.1 142 43.7
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-11 74.7 90 48.9
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 2.0e-11 73.9 55 58.2
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.3e-10 71.2 148 40.5
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 7.1e-09 65.5 68 51.5
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 1.2e-08 64.7 112 35.7
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 2.7e-08 63.5 171 38.6
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 3.5e-08 63.2 70 42.9
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 6.6e-07 58.9 51 49.0
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.1e-06 58.2 50 50.0
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 4.3e-06 56.2 47 46.8
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 9.6e-06 55.1 99 53.5


User provided reference genes

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