Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 6.2e-81 303.9 136 100.0
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-79 299.7 136 97.8
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.2e-79 299.7 136 97.8
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 2.2e-78 295.4 136 98.5
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 9.5e-74 280.0 136 93.4
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 1.6e-73 279.3 136 93.4
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 1.6e-73 279.3 136 93.4
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 4.7e-73 277.7 136 91.9
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.1e-72 276.6 136 91.2
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.4e-72 276.2 136 92.6
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.4e-72 276.2 136 92.6
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.4e-72 276.2 136 91.9
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.8e-72 275.8 136 91.2
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 3.4e-71 271.6 136 91.2
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 2.1e-68 262.3 143 85.3
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 4.6e-68 261.2 136 87.5
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 5.6e-66 254.2 136 83.1
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 2.9e-62 241.9 136 76.5
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 8.4e-62 240.4 136 77.2
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.9e-61 239.2 136 75.7
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.4e-61 238.8 136 75.7
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.2e-61 238.4 136 75.7
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.2e-60 236.5 136 75.7
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.2e-60 236.5 136 75.7
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.1e-60 235.7 136 75.7
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 3.5e-60 235.0 136 74.3
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 6.0e-60 234.2 136 75.0
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 5.1e-59 231.1 136 75.7
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.1e-58 229.9 136 73.5
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.5e-58 229.6 135 73.3
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.5e-58 229.6 136 74.3
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.9e-58 229.2 148 69.6
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.6e-58 227.6 136 72.1
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.6e-58 227.6 136 72.1
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 7.3e-58 227.3 136 72.8
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 2.1e-57 225.7 136 72.8
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 3.6e-57 224.9 154 67.5
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 6.2e-57 224.2 149 67.8
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.1e-56 223.4 136 72.8
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 1.1e-56 223.4 136 73.5
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.1e-56 223.4 136 72.8
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-56 223.4 151 65.6
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.4e-56 223.0 154 67.5
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.8e-56 222.6 136 70.6
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 1.8e-56 222.6 154 67.5
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.4e-56 222.2 138 73.2
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.4e-56 222.2 138 73.2
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.1e-56 221.9 136 70.6
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 138 73.2
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.1e-56 221.9 136 70.6
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.0e-56 221.5 134 70.1
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 5.2e-56 221.1 148 67.6
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 5.2e-56 221.1 136 72.1
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 5.2e-56 221.1 151 67.5
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.5e-55 219.5 149 65.8
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.0e-55 219.2 153 64.7
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 2.6e-55 218.8 146 64.4
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 3.4e-55 218.4 147 66.0
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.4e-55 218.0 160 62.5
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 4.4e-55 218.0 149 65.1
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 5.8e-55 217.6 143 67.1
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 7.6e-55 217.2 131 71.8
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 1.7e-54 216.1 124 73.4
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 2.9e-54 215.3 160 57.5
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 3.8e-54 214.9 131 70.2
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 4.9e-54 214.5 136 70.6
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 6.4e-54 214.2 124 76.6
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 6.4e-54 214.2 134 69.4
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 6.4e-54 214.2 145 66.2
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 8.4e-54 213.8 136 70.6
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 8.4e-54 213.8 154 62.3
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 1.1e-53 213.4 124 74.2
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.1e-53 213.4 128 71.9
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.9e-53 212.6 132 70.5
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.4e-53 212.2 151 60.9
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 3.2e-53 211.8 134 69.4
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 7.1e-53 210.7 150 62.7
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.1e-53 210.7 134 70.9
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 7.1e-53 210.7 150 62.7
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.2e-52 209.9 134 70.9
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 2.1e-52 209.1 159 59.7
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.7e-52 208.8 136 69.1
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.7e-52 208.8 154 60.4
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 4.6e-52 208.0 123 71.5
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 6.0e-52 207.6 137 67.9
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.0e-51 206.8 146 64.4
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 1.7e-51 206.1 133 68.4
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 3.9e-51 204.9 134 67.2
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 5.1e-51 204.5 151 60.3
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.6e-51 204.1 145 60.7
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.1e-50 203.4 146 62.3
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.5e-50 203.0 160 56.2
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.9e-50 202.6 145 60.0
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 3.3e-50 201.8 123 69.1
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 4.3e-50 201.4 155 57.4
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 4.3e-50 201.4 155 57.4
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 5.6e-50 201.1 133 69.2
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 9.6e-50 200.3 124 66.9
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 6.2e-49 197.6 139 62.6
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 9.0e-48 193.7 134 65.7
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.0e-47 192.6 151 57.6
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 9.9e-47 190.3 136 65.4
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 3.8e-46 188.3 143 59.4
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.1e-45 186.8 131 66.4
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 2.7e-44 182.2 131 63.4
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 6.0e-44 181.0 114 66.7
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 6.0e-44 181.0 114 66.7
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.3e-43 179.9 156 53.8
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 2.3e-43 179.1 160 54.4
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 6.2e-41 171.0 105 69.5
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 1.1e-40 170.2 123 59.3
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.4e-40 169.9 174 47.7
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.1e-37 160.2 137 54.0
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.1e-36 156.0 118 56.8
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 3.3e-34 148.7 125 55.2
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 6.2e-33 144.4 137 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.2e-31 140.2 144 46.5
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.9e-26 122.9 84 61.9
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 2.2e-25 119.4 73 69.9
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 1.7e-22 109.8 60 80.0
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 8.5e-22 107.5 58 77.6
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 3.1e-16 89.0 106 45.3
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 4.1e-16 88.6 136 41.9
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 4.1e-16 88.6 115 41.7
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.3e-16 88.2 57 64.9
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.6e-15 85.9 81 48.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.0e-14 84.0 74 52.7
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.2e-14 82.8 80 47.5
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 3.8e-14 82.0 80 46.2
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 2.7e-12 75.9 97 40.2
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.0e-11 72.4 75 46.7
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.9e-11 72.0 103 36.9
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 3.3e-10 68.9 107 35.5
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.7e-09 66.6 40 67.5
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.8e-09 65.9 49 59.2
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.8e-08 63.2 53 54.7
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.1e-08 62.0 52 55.8
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.1e-08 62.0 52 55.8
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 5.3e-08 61.6 57 50.9
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 1.7e-06 56.6 52 51.9


User provided reference genes

Program Settings