Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2139.4 1128 100.0
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 2138.2 1128 99.9
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 2111.3 1128 98.6
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 2105.5 1128 98.2
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 2014.6 1128 93.0
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 2004.6 1128 92.5
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 2000.7 1128 92.2
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1988.8 1128 91.5
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1980.3 1128 90.9
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1976.4 1128 91.8
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1938.7 1128 89.6
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1930.6 1128 89.7
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1912.9 1129 89.4
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1910.2 1139 87.4
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1909.0 1129 89.3
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1902.1 1144 89.9
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1894.4 1128 88.3
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1890.5 1128 88.2
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1818.5 1130 83.5
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1627.8 1135 73.6
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1141 72.9
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1620.9 1141 73.0
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1620.9 1142 72.9
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1615.1 1134 73.3
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1614.7 1139 73.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1612.8 1141 72.8
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1612.0 1129 73.3
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1604.7 1132 72.4
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1602.8 1132 72.1
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1597.0 1141 72.7
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1594.7 1137 72.6
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1593.6 1134 72.0
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1590.9 1134 71.8
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1588.5 1131 71.4
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1588.2 1134 71.6
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1586.6 1130 71.0
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1584.7 1134 71.2
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1584.3 1134 71.5
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1583.5 1138 71.1
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1580.5 1131 71.3
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1579.7 1131 72.3
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1574.3 1131 72.1
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1571.6 1145 70.5
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1183 69.3
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1565.4 1131 70.5
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1565.4 1137 71.0
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1562.7 1137 70.3
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1561.2 1140 70.5
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1559.7 1141 70.5
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1558.9 1130 70.1
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1553.1 1131 70.8
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1552.0 1131 71.1
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1548.5 1138 69.9
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1545.0 1134 69.8
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1541.9 1132 69.5
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1540.4 1132 69.1
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1538.5 1135 68.0
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1536.9 1132 69.0
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1536.9 1131 69.3
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1528.5 1139 69.9
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1523.5 1138 69.0
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1520.8 1108 70.8
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1520.8 1129 68.5
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1519.2 1140 68.6
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1517.3 1136 68.6
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1509.6 1137 67.6
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1508.8 1130 68.8
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1508.8 1130 68.8
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1503.4 1140 67.4
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1503.0 1128 67.6
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1501.1 1142 67.8
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1501.1 1137 67.6
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1498.4 1131 68.0
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1491.9 1132 68.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1476.1 1131 67.7
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1471.8 1012 75.6
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1469.9 1137 67.4
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1469.9 1134 67.0
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1468.4 1142 66.4
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1466.1 1132 66.1
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1464.1 1030 71.6
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1463.4 1132 66.2
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1460.3 1128 66.4
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1458.4 1137 65.9
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1447.2 1132 65.6
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1443.7 1132 66.1
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1439.1 1109 67.0
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1437.9 1078 67.7
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1436.0 1133 65.0
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1436.0 1133 66.0
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1432.2 1148 64.9
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1432.2 1148 64.9
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1404.4 1070 67.9
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1399.4 1078 66.4
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1390.6 1036 67.6
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1342.8 926 73.0
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1327.8 1135 62.6
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1317.8 1130 61.4
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1313.1 927 70.4
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1302.0 1043 64.6
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1301.2 1072 61.7
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1281.2 1098 60.0
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1253.4 1110 58.4
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1219.5 895 68.7
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1186.0 888 67.5
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1168.7 824 73.3
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1086.6 933 60.9
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1076.2 1107 51.7
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 1.8e-306 1056.2 792 68.4
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 6.7e-306 1054.3 1100 50.5
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.5e-297 1026.5 1075 49.7
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.4e-282 976.9 1079 47.9
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 4.2e-276 955.3 674 70.6
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.2e-269 932.9 761 63.6
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 3.7e-232 809.3 925 50.8
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 8.3e-232 808.1 604 69.4
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 9.6e-220 768.1 1099 41.0
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 8.4e-208 728.4 627 59.5
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 2.8e-155 553.9 366 74.3
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.8e-138 498.0 421 64.4
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 5.4e-130 469.9 430 60.7
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 3.1e-109 401.0 357 57.4
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 6.4e-107 393.3 1210 28.4
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 7.3e-95 353.2 316 60.8
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.3e-88 332.4 1152 27.4
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.6e-76 291.6 346 53.5
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.7e-73 281.6 366 45.6
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 8.7e-72 276.6 316 52.5
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 6.7e-64 250.4 333 46.2
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 4.2e-58 231.1 319 46.7
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 2.6e-31 142.1 106 72.6
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 2.8e-30 138.7 150 55.3
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 7.2e-26 124.0 70 78.6
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 2.1e-25 122.5 86 76.7
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 3.6e-25 121.7 68 79.4
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.7e-25 121.3 669 22.0
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 6.1e-25 120.9 109 66.1
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 6.8e-24 117.5 86 74.4


User provided reference genes

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