Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 7.1e-128 460.7 245 100.0
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.3e-126 456.4 245 98.8
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 1.9e-125 452.6 245 98.4
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 5.6e-125 451.1 245 98.0
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 5.3e-123 444.5 245 96.3
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 1.7e-121 439.5 245 95.9
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 2.2e-121 439.1 245 95.1
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 3.2e-120 435.3 245 94.7
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 3.0e-118 428.7 245 92.2
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 4.8e-116 421.4 245 92.2
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.5e-114 416.4 245 91.0
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 1.5e-114 416.4 247 92.7
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 1.5e-114 416.4 247 92.7
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.5e-114 416.4 245 91.0
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 3.8e-113 411.8 246 90.2
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 3.8e-113 411.8 246 90.2
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 4.6e-111 404.8 245 87.3
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 3.0e-110 402.1 245 86.9
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 3.3e-109 398.7 251 88.4
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 3.1e-107 392.1 245 85.3
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 7.6e-106 387.5 242 85.1
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 6.5e-105 384.4 261 78.2
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.0e-94 350.5 265 72.5
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 7.7e-82 307.8 246 65.0
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.5e-80 301.6 243 65.4
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 2.0e-74 283.1 245 61.6
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 1.0e-73 280.8 246 62.2
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 9.4e-72 274.2 250 58.8
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.1e-71 273.1 245 59.6
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 2.1e-71 273.1 240 60.4
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 4.7e-71 271.9 246 59.3
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 6.1e-71 271.6 241 58.9
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 6.1e-71 271.6 252 57.9
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.0e-70 270.8 240 60.0
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 1.4e-70 270.4 240 60.0
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.3e-70 269.6 247 59.5
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 3.0e-70 269.2 246 57.7
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 4.0e-70 268.9 246 58.5
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 4.0e-70 268.9 247 59.5
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 8.8e-70 267.7 248 60.5
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 8.8e-70 267.7 253 58.9
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 8.8e-70 267.7 240 61.2
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 8.8e-70 267.7 243 58.4
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.2e-69 267.3 245 57.1
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 1.5e-69 266.9 252 58.7
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.0e-69 266.5 251 59.0
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 2.0e-69 266.5 249 58.6
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 3.3e-69 265.8 237 60.3
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.3e-69 265.8 253 59.7
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 3.3e-69 265.8 247 58.7
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 4.4e-69 265.4 252 56.7
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 5.7e-69 265.0 246 58.9
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.7e-69 265.0 253 58.9
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 7.5e-69 264.6 247 58.3
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 7.5e-69 264.6 252 57.5
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 9.7e-69 264.2 246 57.7
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 9.7e-69 264.2 253 58.1
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 9.7e-69 264.2 241 57.7
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 1.3e-68 263.8 248 59.3
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.7e-68 263.5 252 58.3
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.7e-68 263.5 250 58.0
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 2.2e-68 263.1 248 59.7
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 2.8e-68 262.7 276 55.1
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.8e-68 262.7 248 59.7
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.8e-68 262.7 248 59.7
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.8e-68 262.7 247 56.3
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.8e-68 262.7 252 55.6
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 3.7e-68 262.3 254 57.9
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.7e-68 262.3 251 57.4
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 4.8e-68 261.9 251 56.2
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 6.3e-68 261.5 240 57.5
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 8.2e-68 261.2 249 56.6
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 1.1e-67 260.8 240 57.1
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 7.0e-67 258.1 245 57.6
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 7.0e-67 258.1 205 64.9
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 9.1e-67 257.7 246 55.7
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 9.1e-67 257.7 246 55.7
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 1.2e-66 257.3 249 56.6
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.2e-66 257.3 251 55.0
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.6e-66 256.9 239 57.7
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.0e-66 256.5 251 58.2
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 2.7e-66 256.1 250 56.8
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 4.5e-66 255.4 250 56.4
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 1.3e-65 253.8 248 56.5
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 1.3e-65 253.8 245 57.6
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.7e-65 253.4 243 56.8
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.7e-65 253.4 275 52.7
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.7e-65 253.4 192 65.6
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 2.2e-65 253.1 279 53.0
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.2e-65 253.1 251 57.0
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 5.0e-65 251.9 243 56.0
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.0e-65 251.9 253 56.5
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.0e-65 251.9 235 57.4
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 8.5e-65 251.1 248 54.0
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 1.5e-64 250.4 258 56.2
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.2e-64 249.2 241 55.6
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.2e-64 249.2 246 55.3
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 3.2e-64 249.2 245 56.7
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 4.2e-64 248.8 142 92.3
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 4.2e-64 248.8 243 57.2
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 1.2e-63 247.3 243 56.4
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.2e-63 247.3 253 52.6
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.1e-63 246.5 245 54.3
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 2.1e-63 246.5 248 54.4
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 2.7e-63 246.1 246 54.9
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 2.7e-63 246.1 243 54.3
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 3.6e-63 245.7 259 54.4
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 6.1e-63 245.0 243 53.5
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 6.1e-63 245.0 248 54.0
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 5.2e-62 241.9 249 53.4
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 5.2e-62 241.9 246 54.5
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 5.2e-62 241.9 258 53.1
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 5.2e-62 241.9 243 52.3
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 6.8e-62 241.5 247 53.4
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 8.8e-62 241.1 249 53.0
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 8.8e-62 241.1 243 55.6
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 1.5e-61 240.4 271 53.1
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 7.5e-61 238.0 251 51.8
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 9.8e-61 237.7 246 52.4
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 4.8e-60 235.3 239 53.6
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.8e-59 233.4 248 51.6
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.1e-59 232.6 232 54.3
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 3.1e-59 232.6 194 60.8
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 3.1e-59 232.6 243 50.6
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 7.0e-59 231.5 247 52.2
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 9.1e-59 231.1 251 51.4
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 1.2e-58 230.7 224 54.0
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.0e-58 229.9 280 50.0
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 1.8e-54 216.9 250 47.2
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.3e-54 216.5 247 49.0
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 4.0e-54 215.7 257 46.7
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.4e-53 212.2 259 45.6
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.7e-53 211.8 257 46.7
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 9.8e-53 211.1 241 49.8
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 2.8e-52 209.5 232 52.2
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 4.9e-52 208.8 254 48.4
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 5.4e-51 205.3 206 57.3
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.2e-50 204.1 110 97.3
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 7.8e-50 201.4 354 39.3
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 1.3e-49 200.7 199 56.3
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 8.6e-49 198.0 359 37.6
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.1e-48 197.6 241 44.8
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 1.5e-48 197.2 199 51.3
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.4e-45 186.0 305 43.6
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 6.4e-44 181.8 243 47.7
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 3.2e-43 179.5 194 49.5
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.9e-40 170.2 293 39.9
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 5.6e-40 168.7 193 49.7
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 3.6e-39 166.0 220 39.1
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.8e-38 163.7 202 40.6
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 7.0e-35 151.8 230 38.3
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.6e-34 150.6 187 43.3
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.9e-32 143.7 144 53.5
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 4.7e-31 139.0 160 48.1
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 1.4e-30 137.5 148 50.0
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 4.0e-30 136.0 116 57.8
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.4e-29 132.9 98 66.3
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 1.9e-27 127.1 156 42.9
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.4e-27 126.7 197 35.0
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 4.6e-26 122.5 167 41.9
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 4.6e-26 122.5 67 95.5
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 3.9e-25 119.4 67 94.0
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 2.5e-24 116.7 143 49.0
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 3.6e-23 112.8 184 33.2
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 6.8e-22 108.6 183 33.9
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-21 107.1 178 45.5
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 5.8e-21 105.5 72 72.2
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 5.8e-21 105.5 204 34.3
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.3e-20 104.4 72 72.2
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.7e-20 104.0 86 60.5
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 9.2e-19 98.2 203 30.0
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.9e-16 90.5 118 46.6
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 9.6e-16 88.2 101 51.5
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.0e-14 82.8 70 58.6
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.2e-13 81.3 70 55.7
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.5e-13 80.9 74 52.7
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.4e-13 79.3 70 54.3
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.9e-11 73.9 59 62.7
Oeu001061.1 Olea europaea HOM05D003160 ORTHO05D005967 1.0e-09 68.2 236 23.7
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 1.3e-09 67.8 181 24.3
BolC4t26421H Brassica oleracea HOM05D003972 ORTHO05D004609 3.0e-09 66.6 55 65.5
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 6.6e-09 65.5 182 30.2
ClCG08G002530 Citrullus lanatus HOM05D003160 ORTHO05D005967 2.1e-07 60.5 185 24.9
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 2.1e-07 60.5 227 23.3
TAR381G0896 Trochodendron aralioides HOM05D003160 ORTHO05D005967 1.4e-06 57.8 213 23.0


User provided reference genes

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