Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.7e-89 331.6 183 100.0
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-84 315.1 181 97.8
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-84 315.1 181 97.8
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.6e-84 315.1 181 97.8
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 6.3e-81 304.3 181 89.0
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 7.0e-80 300.8 179 93.9
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 9.2e-72 273.9 183 85.8
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.6e-68 261.9 188 84.6
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 4.4e-66 255.0 178 78.1
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 4.4e-66 255.0 178 78.1
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.6e-63 246.5 181 76.8
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.3e-62 242.7 178 82.0
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 5.0e-62 241.5 180 73.9
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 5.0e-62 241.5 180 73.9
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.5e-61 239.2 189 77.8
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.5e-58 227.6 180 72.2
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 4.7e-52 208.4 183 71.6
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 9.3e-32 141.0 203 44.8
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.1e-31 139.8 207 50.7
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 6.0e-31 138.3 185 45.9
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.9e-31 137.9 203 50.7
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.0e-30 137.5 203 52.2
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.3e-30 137.1 189 48.1
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 5.1e-30 135.2 189 46.6
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 8.7e-30 134.4 190 46.8
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.9e-29 133.3 211 46.9
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.9e-29 133.3 205 43.9
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 4.3e-29 132.1 191 42.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 5.6e-29 131.7 204 43.6
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.6e-29 131.0 205 43.4
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 2.8e-28 129.4 185 43.2
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 6.2e-28 128.3 185 42.7
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 6.2e-28 128.3 199 42.2
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 8.1e-28 127.9 196 43.4
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.1e-27 127.5 211 45.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.4e-27 127.1 188 42.0
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 3.1e-27 125.9 194 43.3
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.1e-27 125.9 211 40.8
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 4.0e-27 125.6 185 42.2
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.0e-27 125.6 190 42.6
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 5.3e-27 125.2 207 41.1
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 9.0e-27 124.4 194 41.8
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 9.0e-27 124.4 198 41.4
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.2e-26 124.0 200 42.5
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.0e-26 123.2 194 40.2
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 2.6e-26 122.9 222 38.7
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.4e-26 122.5 206 41.7
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.4e-26 122.5 188 40.4
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.4e-26 122.5 195 39.0
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 4.5e-26 122.1 206 38.3
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 4.5e-26 122.1 201 38.8
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.8e-26 121.7 191 41.9
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.7e-25 120.2 198 41.9
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.9e-25 119.4 187 42.2
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 2.9e-25 119.4 189 41.3
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.8e-25 119.0 188 41.0
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 3.8e-25 119.0 191 39.8
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.8e-25 119.0 195 46.2
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 6.4e-25 118.2 215 47.0
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 6.4e-25 118.2 188 39.4
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 6.4e-25 118.2 206 45.6
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 8.4e-25 117.9 191 39.3
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 8.4e-25 117.9 183 41.5
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-24 117.5 193 40.9
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-24 117.1 185 41.6
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.4e-24 117.1 188 39.4
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.9e-24 116.7 199 40.7
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-24 116.3 188 39.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-24 116.3 185 41.6
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.4e-24 116.3 190 41.1
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.4e-24 116.3 191 39.3
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 3.2e-24 115.9 190 38.4
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.2e-24 115.9 199 38.2
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.2e-24 115.5 198 38.9
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 4.2e-24 115.5 186 40.3
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 9.3e-24 114.4 191 42.9
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 9.3e-24 114.4 191 42.9
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.2e-23 114.0 191 39.3
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-23 114.0 189 38.1
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-23 114.0 189 38.1
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-23 114.0 189 38.1
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.2e-23 114.0 199 36.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.6e-23 113.6 203 36.5
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-23 113.6 185 41.1
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.6e-23 113.6 206 39.3
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.1e-23 113.2 207 44.4
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 2.1e-23 113.2 196 37.8
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.7e-23 112.8 203 42.4
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 6.0e-23 111.7 198 39.4
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.0e-23 111.7 192 38.5
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 7.9e-23 111.3 194 38.7
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.3e-22 110.5 192 39.6
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.8e-22 110.2 203 38.9
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.8e-22 110.2 195 37.9
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 3.9e-22 109.0 186 38.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 6.7e-22 108.2 189 37.6
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 6.7e-22 108.2 196 41.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 8.7e-22 107.8 190 37.4
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.7e-22 107.8 190 41.6
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 8.7e-22 107.8 192 38.0
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 8.7e-22 107.8 187 41.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.9e-21 106.7 225 36.0
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.3e-21 105.9 173 43.9
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 3.3e-21 105.9 194 39.7
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 5.6e-21 105.1 190 39.5
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 5.6e-21 105.1 190 35.3
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 7.4e-21 104.8 202 40.6
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 9.6e-21 104.4 193 42.5
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 2.1e-20 103.2 181 43.1
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.8e-20 102.8 193 38.9
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.7e-20 102.4 190 38.4
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 4.8e-20 102.1 190 35.3
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 8.2e-20 101.3 189 42.9
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 8.2e-20 101.3 189 43.9
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-19 100.9 231 33.3
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.4e-19 99.8 194 35.1
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 3.1e-19 99.4 181 37.6
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 4.0e-19 99.0 192 34.9
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 9.0e-19 97.8 164 37.8
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.2e-18 97.4 176 44.9
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.6e-18 96.3 239 36.4
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 4.5e-18 95.5 198 32.3
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 7.6e-18 94.7 193 33.7
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.0e-17 94.4 190 38.4
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.0e-17 94.4 190 38.4
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.0e-17 94.4 200 34.5
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-17 93.6 188 41.5
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.7e-17 93.6 188 41.5
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.7e-17 93.6 181 39.8
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.7e-17 93.6 178 43.8
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.9e-17 92.8 179 36.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.9e-17 92.8 182 35.7
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.9e-17 92.8 190 37.9
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.8e-17 92.4 187 41.7
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 4.9e-17 92.0 193 31.6
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 4.9e-17 92.0 195 36.4
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 6.5e-17 91.7 164 37.2
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 6.5e-17 91.7 188 35.1
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.4e-17 91.3 195 42.1
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.9e-16 90.1 183 36.1
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.5e-16 89.7 179 39.1
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 4.2e-16 89.0 164 36.6
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 5.5e-16 88.6 226 32.3
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.6e-15 87.0 206 32.5
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.7e-15 86.3 71 64.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 6.0e-15 85.1 188 34.6
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 7.9e-15 84.7 207 31.4
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.0e-14 82.8 181 34.3
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 5.1e-14 82.0 102 46.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.7e-14 81.6 72 61.1
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 6.7e-14 81.6 167 35.9
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.3e-13 79.0 208 31.2
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 5.7e-13 78.6 166 36.7
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 7.4e-13 78.2 167 36.5
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 7.4e-13 78.2 66 60.6
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.3e-12 77.4 186 35.5
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.3e-12 77.4 156 37.2
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.8e-12 76.3 193 30.1
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.7e-12 75.9 148 35.1
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.7e-12 75.9 65 58.5
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.3e-12 75.1 182 31.3
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 8.2e-12 74.7 191 30.9
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.1e-11 72.4 74 54.1
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.6e-10 69.7 152 39.5
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 3.4e-10 69.3 194 30.4
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 4.5e-10 68.9 180 34.4
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 5.9e-10 68.6 76 48.7
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 8.5e-09 64.7 179 33.5
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.2e-08 62.8 180 31.1
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 7.9e-07 58.2 164 32.9
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.0e-06 57.8 92 38.0
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 3.9e-06 55.8 203 28.6


User provided reference genes

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