Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 1.8e-113 412.5 199 100.0
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 3.4e-112 408.3 199 99.0
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.7e-100 369.4 200 93.0
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 5.1e-84 314.7 200 82.0
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 2.5e-70 269.2 216 70.4
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.2e-69 266.9 217 69.1
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 8.2e-66 254.2 230 63.9
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 8.2e-58 227.6 198 63.6
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 2.2e-55 219.5 219 61.6
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 7.2e-54 214.5 203 60.6
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 1.2e-53 213.8 199 61.8
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.6e-53 213.4 196 61.7
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.4e-52 210.3 218 57.8
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.1e-51 207.2 206 59.7
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 4.4e-51 205.3 216 58.3
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.7e-50 203.4 198 58.6
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 2.8e-50 202.6 179 63.1
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 2.8e-50 202.6 179 63.1
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 8.2e-50 201.1 179 62.6
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.4e-49 200.3 180 62.2
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.4e-49 200.3 180 62.2
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 2.6e-48 196.1 195 55.4
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 7.7e-48 194.5 202 56.9
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 5.0e-47 191.8 202 55.0
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 8.5e-47 191.0 205 59.0
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.1e-45 186.4 238 50.8
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.1e-45 186.4 218 52.8
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 7.0e-41 171.4 196 52.6
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 2.1e-37 159.8 118 72.9
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 2.1e-37 159.8 118 72.9
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 8.3e-34 147.9 203 47.3
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 7.0e-33 144.8 204 43.6
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 7.0e-33 144.8 213 48.8
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 1.2e-32 144.1 164 48.8
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 3.5e-32 142.5 203 43.8
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 5.9e-32 141.7 204 43.1
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 1.0e-31 141.0 198 44.9
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 8.5e-31 137.9 201 43.8
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 1.5e-30 137.1 197 43.7
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 5.5e-30 135.2 202 46.0
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 2.1e-29 133.3 177 44.6
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 2.1e-29 133.3 198 44.4
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 6.1e-29 131.7 204 40.7
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 6.1e-29 131.7 201 43.3
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 1.8e-28 130.2 195 43.6
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 2.3e-28 129.8 204 42.6
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 3.0e-28 129.4 196 42.3
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.0e-28 129.4 171 46.2
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 4.0e-28 129.0 182 44.0
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 6.8e-28 128.3 170 46.5
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 1.2e-27 127.5 196 42.3
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.5e-27 127.1 193 39.9
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.6e-27 126.3 161 47.2
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.6e-27 126.3 170 45.9
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 3.4e-27 125.9 200 41.0
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 5.7e-27 125.2 180 42.8
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 7.5e-27 124.8 177 45.8
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.3e-26 124.0 164 44.5
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.3e-26 124.0 203 38.9
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 4.9e-26 122.1 200 41.0
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.9e-26 122.1 168 41.1
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 4.9e-26 122.1 168 41.1
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 8.3e-26 121.3 197 42.1
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 1.4e-25 120.6 203 41.4
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 1.8e-25 120.2 172 43.0
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 3.1e-25 119.4 183 42.6
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.1e-25 119.0 197 40.1
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 4.1e-25 119.0 160 43.1
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 5.4e-25 118.6 211 39.8
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 7.0e-25 118.2 161 45.3
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.6e-24 117.1 199 40.2
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 1.6e-24 117.1 193 39.9
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 1.6e-24 117.1 222 37.4
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 2.0e-24 116.7 220 38.6
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.7e-24 116.3 174 36.8
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 4.5e-24 115.5 203 37.9
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 5.9e-24 115.2 202 36.6
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.3e-23 114.0 158 44.3
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 1.7e-23 113.6 208 37.0
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 2.3e-23 113.2 161 41.6
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.3e-23 113.2 200 37.5
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 2.9e-23 112.8 171 42.7
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 5.0e-23 112.1 161 41.6
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 5.0e-23 112.1 199 37.2
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 8.6e-23 111.3 160 43.1
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.1e-22 110.9 196 36.2
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 1.5e-22 110.5 160 40.0
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.9e-22 110.2 160 39.4
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 3.3e-22 109.4 168 38.7
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 5.6e-22 108.6 162 42.0
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 9.5e-22 107.8 153 43.1
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 1.2e-21 107.5 159 41.5
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.2e-21 107.5 162 38.3
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 1.6e-21 107.1 184 39.7
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 8.0e-21 104.8 162 38.3
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 8.0e-21 104.8 199 35.2
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 2.3e-20 103.2 192 35.9
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 3.0e-20 102.8 158 43.0
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 3.0e-20 102.8 199 35.7
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 4.0e-20 102.4 162 36.4
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 4.0e-20 102.4 174 37.9
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 4.0e-20 102.4 167 38.9
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 8.9e-20 101.3 162 35.2
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.0e-19 100.1 186 36.6
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.6e-19 99.8 161 37.9
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 3.4e-19 99.4 59 86.4
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 3.4e-19 99.4 161 37.9
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 7.5e-19 98.2 220 32.3
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.7e-18 97.1 186 36.6
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.9e-18 96.3 175 38.3
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 2.9e-18 96.3 59 83.1
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 2.9e-18 96.3 59 83.1
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 6.4e-18 95.1 197 35.0
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 2.4e-17 93.2 170 35.9
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.4e-17 93.2 84 51.2
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 3.2e-17 92.8 148 40.5
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 4.1e-17 92.4 200 35.5
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 1.2e-16 90.9 158 35.4
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.6e-16 90.5 160 38.1
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 1.7e-15 87.0 160 36.9
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 6.6e-15 85.1 157 36.3
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 6.6e-15 85.1 163 36.8
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 2.5e-14 83.2 157 34.4
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 2.1e-13 80.1 130 40.8
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 2.1e-13 80.1 144 38.2
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 1.2e-11 74.3 61 57.4
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 1.2e-11 74.3 90 41.1
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 5.8e-11 72.0 62 50.0
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 7.5e-11 71.6 157 31.2
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 9.8e-11 71.2 173 33.5
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 1.7e-10 70.5 182 30.2
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 8.3e-10 68.2 152 31.6
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 1.9e-09 67.0 119 40.3
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 3.5e-08 62.8 88 39.8
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 2.3e-07 60.1 188 30.9
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 3.9e-07 59.3 178 26.4
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.1e-06 57.8 162 28.4
Zm00001eb158870 Zea mays HOM05D005169 ORTHO05D006436 2.5e-06 56.6 158 27.2


User provided reference genes

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