Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 0.0e+00 1244.6 649 100.0
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 0.0e+00 1244.6 649 100.0
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 0.0e+00 1162.1 649 93.4
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 0.0e+00 1161.7 649 93.5
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 0.0e+00 1114.8 626 91.7
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 3.6e-304 1047.7 646 84.2
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 5.8e-294 1013.8 641 83.0
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 1.2e-291 1006.1 646 79.6
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 5.0e-290 1000.7 569 91.4
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 7.5e-286 986.9 642 81.3
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 6.6e-282 973.8 646 80.7
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 1.2e-235 820.1 658 66.1
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 8.5e-197 691.0 510 67.8
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 9.2e-159 564.7 564 52.1
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 3.5e-158 562.8 619 48.8
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.0e-157 561.2 593 50.8
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 1.0e-157 561.2 580 51.2
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 6.6e-157 558.5 581 50.4
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 2.8e-155 553.1 574 50.3
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 7.6e-153 545.0 662 46.4
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 3.8e-152 542.7 559 50.6
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 1.1e-151 541.2 550 52.2
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 7.1e-151 538.5 584 49.5
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 7.8e-150 535.0 550 52.2
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 3.9e-149 532.7 649 47.8
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 5.1e-149 532.3 608 48.7
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 5.6e-148 528.9 610 47.4
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 3.6e-147 526.2 556 48.7
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 4.8e-147 525.8 576 49.5
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 8.1e-147 525.0 586 49.0
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 6.9e-146 521.9 556 48.9
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 4.4e-145 519.2 644 46.0
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 4.4e-145 519.2 607 48.1
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 6.4e-144 515.4 608 47.5
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 2.4e-143 513.5 576 47.7
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 3.2e-143 513.1 572 48.4
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 6.6e-141 505.4 548 50.4
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 1.1e-140 504.6 572 48.1
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 3.3e-140 503.1 550 49.1
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 4.3e-140 502.7 549 49.0
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 6.2e-139 498.8 566 46.6
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 2.4e-138 496.9 612 45.9
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 3.1e-138 496.5 498 51.8
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 7.6e-137 491.9 600 47.2
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 4.2e-135 486.1 625 44.8
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.2e-134 484.6 478 53.1
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 4.6e-134 482.6 621 45.7
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 1.8e-133 480.7 517 49.1
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.3e-133 480.3 596 47.0
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 3.0e-133 479.9 582 42.8
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 2.1e-131 473.8 541 44.7
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.8e-131 473.4 596 45.6
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 4.8e-131 472.6 581 45.6
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 1.1e-130 471.5 621 43.2
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 9.0e-130 468.4 477 52.2
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 4.5e-129 466.1 477 51.4
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 1.7e-128 464.2 555 46.7
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 4.9e-128 462.6 669 43.3
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 8.4e-128 461.8 583 44.1
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 1.9e-124 450.7 606 44.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 5.7e-124 449.1 602 45.0
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 7.4e-124 448.7 504 48.8
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 1.8e-122 444.1 596 44.1
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 5.3e-122 442.6 475 48.6
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 6.5e-120 435.6 491 47.7
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 6.5e-120 435.6 554 44.9
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 3.2e-119 433.3 646 40.2
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 2.3e-117 427.2 653 38.0
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 3.0e-117 426.8 472 49.6
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.1e-116 424.9 491 47.0
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 1.9e-116 424.1 583 43.1
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 2.5e-116 423.7 413 53.8
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 4.8e-115 419.5 546 41.4
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 4.1e-114 416.4 426 52.3
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 6.9e-114 415.6 617 42.1
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 7.7e-113 412.1 420 51.7
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 7.7e-113 412.1 420 50.0
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.2e-112 410.6 583 42.7
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 3.2e-111 406.8 469 48.2
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 6.7e-109 399.1 586 41.0
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 8.8e-109 398.7 376 54.5
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 1.7e-107 394.4 409 50.6
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.2e-105 388.3 413 50.6
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 1.2e-102 378.3 493 40.6
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 7.9e-102 375.6 514 42.4
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.8e-101 374.4 399 48.6
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 2.2e-96 357.5 550 38.5
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 5.0e-96 356.3 628 36.6
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 2.7e-94 350.5 503 41.4
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 2.8e-91 340.5 345 51.6
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 1.0e-85 322.0 366 48.4
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 8.8e-85 318.9 352 49.4
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 1.2e-78 298.5 338 47.9
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.8e-75 287.3 318 46.5
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.6e-73 281.6 598 35.3
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 7.7e-73 279.3 331 46.2
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.2e-70 271.9 406 42.4
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 6.4e-67 259.6 290 48.3
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 1.8e-66 258.1 245 50.6
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 2.1e-62 244.6 434 37.6
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.9e-56 223.8 285 47.0
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 1.9e-50 204.9 313 42.2
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 5.6e-39 166.8 171 52.0
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 1.4e-26 125.6 169 45.0
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 1.9e-26 125.2 216 40.3
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 2.4e-26 124.8 147 51.7
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.6e-25 122.1 142 52.1
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 8.7e-24 116.3 147 44.9
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 7.9e-17 93.2 272 23.2
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 3.1e-13 81.3 56 55.4
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 3.8e-11 74.3 68 55.9
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.6e-09 68.9 59 52.5
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 5.7e-07 60.5 95 40.0


User provided reference genes

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