Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 2.6e-232 808.5 458 100.0
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 2.6e-232 808.5 458 100.0
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.8e-202 708.8 459 86.7
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 6.0e-197 691.0 461 85.2
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 3.0e-196 688.7 460 86.7
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 1.8e-193 679.5 461 85.7
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 7.6e-192 674.1 459 87.4
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 8.4e-191 670.6 462 86.6
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 6.7e-188 661.0 460 86.1
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 3.1e-185 652.1 461 83.7
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 8.7e-180 634.0 442 86.0
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 3.1e-177 625.5 453 83.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 3.4e-176 622.1 442 84.8
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 4.1e-169 598.6 461 80.5
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 5.9e-168 594.7 461 79.8
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 2.0e-144 516.5 464 71.1
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.9e-142 510.0 480 66.7
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 6.1e-133 478.4 329 84.8
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.6e-125 453.8 465 63.9
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.1e-116 424.5 459 61.0
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.2e-115 421.0 459 61.9
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 3.0e-111 406.4 460 59.3
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 5.1e-111 405.6 459 59.3
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 9.5e-110 401.4 464 55.4
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.6e-109 400.6 383 61.1
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 2.1e-109 400.2 483 54.2
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 8.1e-109 398.3 471 56.9
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.8e-108 397.1 483 54.0
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.2e-107 394.4 462 56.1
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.2e-107 394.4 473 56.2
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 2.6e-107 393.3 480 53.5
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.7e-106 390.6 467 52.7
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.2e-106 390.2 475 51.8
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 1.1e-105 387.9 465 57.0
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 7.1e-105 385.2 453 51.7
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 3.5e-104 382.9 469 53.3
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 3.5e-104 382.9 463 59.0
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 4.6e-104 382.5 467 51.2
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.0e-103 381.3 473 57.5
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 1.0e-103 381.3 387 57.9
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.3e-103 380.9 391 63.4
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 1.3e-103 380.9 477 53.0
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 3.9e-103 379.4 399 56.6
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 8.7e-103 378.3 470 49.4
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 1.1e-102 377.9 461 51.4
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.9e-102 377.1 415 63.4
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 7.3e-102 375.2 469 51.4
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 1.2e-101 374.4 466 50.9
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 2.1e-101 373.6 474 54.0
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 2.8e-101 373.2 453 50.1
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 2.8e-101 373.2 470 49.4
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 3.6e-101 372.9 420 62.1
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 4.7e-101 372.5 403 58.6
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 6.2e-101 372.1 471 51.0
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 1.1e-100 371.3 396 55.1
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.8e-100 370.5 456 50.4
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 1.8e-100 370.5 463 50.8
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 4.0e-100 369.4 470 53.0
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 4.0e-100 369.4 467 52.0
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 5.2e-100 369.0 470 51.9
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.2e-99 367.9 463 56.8
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 4.4e-99 365.9 423 52.7
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 5.8e-99 365.5 399 52.6
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 5.8e-99 365.5 413 51.8
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 7.6e-99 365.2 467 52.7
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 7.6e-99 365.2 415 54.0
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 1.3e-98 364.4 409 52.6
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 2.9e-98 363.2 424 51.7
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 4.9e-98 362.5 463 51.4
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 4.2e-97 359.4 489 52.1
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 2.1e-96 357.1 468 48.7
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 5.1e-95 352.4 445 54.2
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.5e-94 350.9 418 55.5
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.9e-94 350.5 479 51.6
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 1.9e-94 350.5 412 52.9
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 2.5e-94 350.1 477 51.6
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 1.6e-93 347.4 463 51.4
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 2.1e-93 347.1 471 53.9
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 3.6e-93 346.3 460 49.8
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 6.2e-93 345.5 465 54.6
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.9e-92 342.0 327 62.7
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 2.6e-91 340.1 389 54.2
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.6e-91 340.1 451 49.4
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 5.8e-91 339.0 439 50.6
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 2.4e-89 333.6 535 47.1
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.9e-86 323.9 457 50.8
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 1.4e-84 317.8 327 62.1
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.6e-83 313.5 414 47.8
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 2.4e-81 307.0 394 48.5
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 3.2e-81 306.6 469 45.8
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 4.2e-81 306.2 453 45.5
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 6.0e-80 302.4 408 50.7
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.0e-79 301.6 324 60.8
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 8.7e-79 298.5 428 46.7
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 1.5e-78 297.7 382 51.0
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 2.1e-77 293.9 461 43.8
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 2.8e-77 293.5 377 53.1
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 4.8e-77 292.7 324 56.8
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 8.2e-77 292.0 364 49.2
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 1.5e-75 287.7 353 56.4
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.9e-73 280.8 471 44.6
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 3.2e-73 280.0 407 51.1
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.3e-73 278.5 421 46.6
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.8e-71 274.2 421 46.1
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.3e-69 268.1 324 56.8
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 8.2e-69 265.4 312 51.6
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.8e-68 264.2 615 37.7
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.8e-68 264.2 615 37.7
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 3.4e-67 260.0 216 64.4
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.3e-66 258.1 401 47.6
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 5.0e-66 256.1 625 33.9
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 2.5e-65 253.8 470 47.4
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 9.4e-65 251.9 473 40.8
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 9.4e-65 251.9 357 46.2
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.8e-63 247.7 506 35.8
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.3e-62 243.0 202 62.9
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.8e-60 237.7 334 54.5
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 2.5e-57 227.3 446 41.3
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.2e-56 224.9 380 40.5
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 6.3e-53 212.6 238 50.8
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.7e-50 204.5 336 52.1
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 2.1e-48 197.6 282 44.7
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.3e-47 194.1 116 81.0
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 2.9e-42 177.2 368 45.9
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 8.5e-42 175.6 99 81.8
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 8.8e-39 165.6 358 35.8
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 5.7e-38 162.9 132 74.2
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 2.2e-37 161.0 336 46.4
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.7e-35 154.1 181 41.4
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 3.5e-27 127.1 170 37.6
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.3e-26 124.4 332 38.6
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.1e-25 122.1 67 85.1
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.2e-21 107.8 74 73.0
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.4e-20 104.4 64 76.6
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.0e-18 99.0 208 39.9
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 1.0e-18 99.0 66 75.8
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 5.0e-18 96.7 321 31.8
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 9.5e-17 92.4 264 36.0
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.0e-16 89.4 139 44.6
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.0e-16 89.4 139 44.6
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.4e-14 84.0 51 74.5
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 4.4e-14 83.6 164 42.7
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 1.4e-12 78.6 47 74.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 1.6e-11 75.1 75 48.0
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 4.7e-08 63.5 140 26.4
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 5.8e-06 56.6 52 55.8


User provided reference genes

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