Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 0.0e+00 2284.6 1128 100.0
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 0.0e+00 2138.6 1135 93.4
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 0.0e+00 2121.7 1133 92.9
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 0.0e+00 2115.5 1133 92.8
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 0.0e+00 1915.2 1133 83.5
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 0.0e+00 1846.2 1131 81.0
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 0.0e+00 1785.4 1132 79.0
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 0.0e+00 1776.9 1133 77.6
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 0.0e+00 1742.2 1138 75.8
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 0.0e+00 1705.6 1138 77.7
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 0.0e+00 1419.8 1181 61.9
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 1.6e-230 803.9 1259 39.9
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 4.6e-230 802.4 1242 40.7
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 7.6e-225 785.0 1266 39.6
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 1.2e-222 777.7 1301 38.2
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 5.1e-221 772.3 1243 39.3
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 1.2e-219 767.7 1325 37.7
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 3.6e-219 766.1 1264 39.1
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.4e-218 764.2 1287 39.0
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 3.1e-218 763.1 1262 38.4
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 4.0e-218 762.7 1256 38.6
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 4.4e-217 759.2 1334 36.7
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 5.8e-217 758.8 1253 38.7
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 3.8e-216 756.1 1237 38.1
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 2.4e-215 753.4 1316 37.5
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 9.3e-215 751.5 1270 38.7
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.6e-214 750.7 1157 40.5
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 2.7e-214 750.0 1248 38.5
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 3.5e-214 749.6 1267 38.0
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.3e-213 747.7 1260 38.7
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 3.0e-213 746.5 1262 38.7
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 1.1e-212 744.6 1216 39.2
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 5.6e-212 742.3 1262 38.2
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.6e-211 740.7 1264 38.0
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 1.1e-210 738.0 1253 38.3
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 4.5e-209 732.6 1273 37.9
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 3.8e-208 729.6 1236 37.7
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 1.1e-207 728.0 1238 37.5
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 2.4e-207 726.9 1251 37.3
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 6.0e-206 722.2 1259 37.6
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 3.9e-205 719.5 1310 36.1
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 5.6e-204 715.7 1210 37.9
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 7.4e-204 715.3 1210 37.8
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 9.6e-204 714.9 1240 37.0
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 2.4e-202 710.3 1248 38.0
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 9.9e-201 704.9 1205 37.4
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 1.1e-199 701.4 1154 38.2
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 4.2e-199 699.5 1244 37.7
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.3e-197 694.5 1249 36.8
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.1e-196 691.4 1212 37.5
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 1.6e-195 687.6 1241 38.0
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 7.6e-193 678.7 1241 38.0
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 2.2e-192 677.2 1272 35.8
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 6.5e-192 675.6 1231 35.9
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 2.5e-188 663.7 1265 34.2
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 1.3e-184 651.4 1067 39.1
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 3.2e-183 646.7 1258 35.7
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 1.3e-181 641.3 1262 34.5
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 2.3e-181 640.6 1267 34.4
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 5.3e-178 629.4 1293 33.2
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 2.9e-176 623.6 914 41.4
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 9.4e-175 618.6 1226 35.0
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 6.1e-174 615.9 1451 32.2
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 1.8e-170 604.4 1256 34.3
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 7.7e-169 599.0 1270 34.6
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 5.2e-165 586.3 963 40.2
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 2.2e-160 570.9 1179 33.8
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 8.0e-158 562.4 1009 37.3
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.3e-155 555.1 824 41.0
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 4.1e-154 550.1 1085 34.3
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.5e-148 531.6 835 38.4
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 9.1e-146 522.3 337 78.6
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 2.0e-145 521.2 826 38.4
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 2.0e-140 504.6 838 36.4
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.2e-126 458.8 1428 27.8
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 1.2e-121 442.2 891 33.9
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.5e-116 425.2 1071 31.7
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.0e-112 412.5 548 42.2
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 2.3e-112 411.4 887 35.4
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 1.5e-111 408.7 1038 31.2
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 9.5e-111 406.0 732 35.0
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 2.7e-105 387.9 369 52.3
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 5.2e-101 373.6 525 40.8
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 4.2e-98 364.0 752 32.3
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 4.2e-98 364.0 1284 27.1
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.3e-96 359.0 362 50.6
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 6.6e-96 356.7 358 51.1
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 3.2e-90 337.8 387 45.7
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 3.9e-88 330.9 317 53.9
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 3.3e-79 301.2 894 27.7
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.1e-77 296.2 843 29.9
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 8.8e-64 250.0 884 27.5
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 7.4e-63 246.9 475 33.1
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 1.5e-60 239.2 369 37.4
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 2.0e-60 238.8 271 46.5
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 9.1e-53 213.4 383 35.5
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 2.1e-49 202.2 996 23.6
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 4.8e-46 191.0 206 49.5
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.1e-45 188.3 242 47.1
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 2.2e-43 182.2 396 32.3
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 5.0e-43 181.0 333 35.4
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 5.0e-43 181.0 333 35.4
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 6.5e-43 180.6 175 52.0
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 1.1e-42 179.9 442 32.1
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 4.8e-38 164.5 253 40.7
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.4e-37 162.2 549 25.9
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 3.8e-35 154.8 173 47.4
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 4.2e-34 151.4 182 45.6
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.4e-29 136.3 261 34.1
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 3.1e-29 135.2 88 76.1
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 1.2e-28 133.3 145 42.8
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.5e-26 126.3 187 36.9
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 7.2e-26 124.0 532 23.7
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.0e-24 120.2 282 30.5
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 3.0e-24 118.6 171 43.3
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 3.0e-24 118.6 218 33.0
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 3.4e-23 115.2 84 70.2
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 9.8e-23 113.6 94 62.8
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 7.3e-18 97.4 242 31.4
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 8.9e-16 90.5 151 37.1
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 3.4e-15 88.6 51 82.4
BcaC09g50095 Brassica carinata HOM05D034322 ORTHO05D024133 2.2e-14 85.9 49 85.7
BcaC06g35590 Brassica carinata HOM05D033522 ORTHO05D024133 8.3e-14 84.0 83 55.4
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 8.3e-14 84.0 141 36.2
BolC3t19073H Brassica oleracea HOM05D005395 ORTHO05D024133 1.1e-10 73.6 42 83.3
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 1.9e-10 72.8 98 31.6
BcaC04g21780 Brassica carinata HOM05D020491 ORTHO05D006352 1.6e-09 69.7 39 79.5
BcaC02g09305 Brassica carinata HOM05D020491 ORTHO05D006352 3.6e-09 68.6 39 79.5
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.6e-09 68.6 81 45.7
BcaC04g20954 Brassica carinata HOM05D020491 ORTHO05D006352 8.0e-09 67.4 39 76.9
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 1.1e-08 67.0 123 37.4
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 5.2e-08 64.7 81 44.4
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 5.2e-08 64.7 148 29.1
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.0e-07 62.8 81 43.2
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 2.0e-07 62.8 88 40.9
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.3e-06 60.1 68 48.5


User provided reference genes

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