Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p21910 Brassica napus HOM05D003685 ORTHO05D003168 1.2e-29 132.5 67 100.0
BraA10t44250Z Brassica rapa HOM05D003685 ORTHO05D003168 7.9e-21 103.2 53 98.1
Sp6g26740 Schrenkiella parvula HOM05D003685 ORTHO05D003168 2.8e-18 94.7 53 88.7
Thhalv10015161m.g Eutrema salsugineum HOM05D003685 ORTHO05D003168 6.2e-18 93.6 53 86.8
AL6G28560 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 2.0e-16 88.6 53 84.9
AT5G17480 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 2.0e-16 88.6 53 84.9
BcaB04g19369 Brassica carinata HOM05D003685 ORTHO05D003168 2.0e-16 88.6 61 70.5
Sp3g02430 Schrenkiella parvula HOM05D003685 ORTHO05D003168 2.0e-16 88.6 53 81.1
Aa31LG5G13930 Aethionema arabicum HOM05D003685 ORTHO05D003168 5.8e-16 87.0 63 69.8
AL3G13100 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 5.8e-16 87.0 53 79.2
AT3G03430 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 5.8e-16 87.0 53 79.2
Carub.0006s1571 Capsella rubella HOM05D003685 ORTHO05D003168 5.8e-16 87.0 53 83.0
CARHR077450 Cardamine hirsuta HOM05D003685 ORTHO05D003168 5.8e-16 87.0 53 79.2
CARHR195720 Cardamine hirsuta HOM05D003685 ORTHO05D003168 7.6e-16 86.7 53 81.1
BcaC05g30536 Brassica carinata HOM05D003685 ORTHO05D003168 2.2e-15 85.1 53 75.5
A03p33270 Brassica napus HOM05D003685 ORTHO05D003168 2.2e-15 85.1 52 78.8
A05p43820 Brassica napus HOM05D003685 ORTHO05D003168 2.2e-15 85.1 53 75.5
C05p63400 Brassica napus HOM05D003685 ORTHO05D003168 2.2e-15 85.1 53 75.5
BolC5t35004H Brassica oleracea HOM05D003685 ORTHO05D003168 2.2e-15 85.1 53 75.5
BraA05t23119Z Brassica rapa HOM05D003685 ORTHO05D003168 2.2e-15 85.1 53 75.5
BcaC01g04402 Brassica carinata HOM05D003685 ORTHO05D003168 4.9e-15 84.0 52 76.9
BcaC01g04406 Brassica carinata HOM05D003685 ORTHO05D003168 4.9e-15 84.0 52 76.9
C03p40520 Brassica napus HOM05D003685 ORTHO05D003168 4.9e-15 84.0 52 76.9
BolC3t16317H Brassica oleracea HOM05D003685 ORTHO05D003168 4.9e-15 84.0 52 76.9
BraA03t12499Z Brassica rapa HOM05D003685 ORTHO05D003168 4.9e-15 84.0 52 76.9
BcaC09g47746 Brassica carinata HOM05D003685 ORTHO05D003168 2.4e-14 81.6 52 76.9
THA.LOC104820836 Tarenaya hassleriana HOM05D003685 ORTHO05D003168 5.5e-14 80.5 53 77.4
BraA01t04580Z Brassica rapa HOM05D003685 ORTHO05D003168 3.5e-13 77.8 49 73.5
BolC1t05831H Brassica oleracea HOM05D003685 ORTHO05D003168 7.9e-13 76.6 52 71.2
BcaC05g30270 Brassica carinata HOM05D003685 ORTHO05D003168 3.9e-12 74.3 47 74.5
Thecc.04G119100 Theobroma cacao HOM05D003685 ORTHO05D003168 3.9e-12 74.3 53 69.8
COL.COLO4_15735 Corchorus olitorius HOM05D003685 ORTHO05D003168 5.1e-12 73.9 53 69.8
Actinidia22789 Actinidia chinensis HOM05D000008 ORTHO05D000005 2.5e-11 71.6 59 61.0
Manes.01G116500 Manihot esculenta HOM05D003685 ORTHO05D003168 7.4e-11 70.1 54 66.7
Sed0024816 Sechium edule HOM05D003685 ORTHO05D003168 7.4e-11 70.1 53 66.0
BcaC03g13523 Brassica carinata HOM05D003685 ORTHO05D003168 9.6e-11 69.7 49 77.6
A02p04230 Brassica napus HOM05D003685 ORTHO05D003168 9.6e-11 69.7 49 77.6
C02p09110 Brassica napus HOM05D003685 ORTHO05D003168 9.6e-11 69.7 49 77.6
BolC2t06822H Brassica oleracea HOM05D003685 ORTHO05D003168 9.6e-11 69.7 49 77.6
BraA02t05386Z Brassica rapa HOM05D003685 ORTHO05D003168 9.6e-11 69.7 49 77.6
Hma1.2p1_0832F.1_g225520 Hydrangea macrophylla HOM05D003685 ORTHO05D003168 1.6e-10 68.9 51 64.7
BcaC04g18788 Brassica carinata HOM05D003685 ORTHO05D003168 2.1e-10 68.6 37 91.9
BcaC05g30274 Brassica carinata HOM05D003685 ORTHO05D003168 2.1e-10 68.6 53 66.0
C09p59660 Brassica napus HOM05D003685 ORTHO05D003168 2.1e-10 68.6 37 91.9
QL11p003870 Quercus lobata HOM05D003685 ORTHO05D003168 2.1e-10 68.6 54 68.5
Manes.17G064700 Manihot esculenta HOM05D003685 ORTHO05D003168 2.8e-10 68.2 48 68.8
ClCG03G008650 Citrullus lanatus HOM05D003685 ORTHO05D003168 3.7e-10 67.8 51 66.7
Duzib211G0337 Durio zibethinus HOM05D003685 ORTHO05D003168 3.7e-10 67.8 51 64.7
CSS0039227 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 4.8e-10 67.4 51 64.7
Cpa.g.sc116.33 Carica papaya HOM05D003685 ORTHO05D003168 6.2e-10 67.0 53 66.0
CiPaw.03G069700 Carya illinoinensis HOM05D003685 ORTHO05D003168 6.2e-10 67.0 54 66.7
Medtr5g079470 Medicago truncatula HOM05D003685 ORTHO05D003168 6.2e-10 67.0 61 59.0
BolC9t58805H Brassica oleracea HOM05D003685 ORTHO05D003168 8.2e-10 66.6 37 89.2
MELO3C022853.2 Cucumis melo HOM05D003685 ORTHO05D003168 8.2e-10 66.6 51 64.7
Sed0020121 Sechium edule HOM05D003685 ORTHO05D003168 8.2e-10 66.6 51 64.7
TWI53G1623 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 8.2e-10 66.6 53 62.3
CsaV3_5G024070 Cucumis sativus L. HOM05D000964 ORTHO05D003168 1.1e-09 66.2 48 68.8
Gohir.A11G160900 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.1e-09 66.2 61 57.4
Gohir.D11G167200 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.1e-09 66.2 61 57.4
Gorai.007G178300 Gossypium raimondii HOM05D003685 ORTHO05D003168 1.1e-09 66.2 61 57.4
Oeu000910.1 Olea europaea HOM05D003685 ORTHO05D003168 1.1e-09 66.2 51 62.7
PGR004G0993 Punica granatum HOM05D003685 ORTHO05D003168 2.4e-09 65.1 64 54.7
MD09G1262700 Malus domestica HOM05D003685 ORTHO05D003168 3.1e-09 64.7 51 64.7
Cc07_g08080 Coffea canephora HOM05D003685 ORTHO05D003168 6.9e-09 63.5 51 60.8
Lalb_Chr15g0084851 Lupinus albus HOM05D003685 ORTHO05D003168 6.9e-09 63.5 54 63.0
Manes.13G093900 Manihot esculenta HOM05D003685 ORTHO05D003168 6.9e-09 63.5 54 61.1
Gorai.001G086900 Gossypium raimondii HOM05D003685 ORTHO05D003168 9.0e-09 63.2 52 59.6
Lalb_Chr20g0117001 Lupinus albus HOM05D003685 ORTHO05D003168 9.0e-09 63.2 54 61.1
TWI74G1588 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 9.0e-09 63.2 53 60.4
CSS0016349 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 1.5e-08 62.4 47 63.8
DCAR_025870 Daucus carota HOM05D003685 ORTHO05D003168 1.5e-08 62.4 51 62.7
vmacro22373 Vaccinium macrocarpon HOM05D014992 ORTHO05D003168 1.5e-08 62.4 55 63.6
vmacro22897 Vaccinium macrocarpon HOM05D003685 ORTHO05D003168 1.5e-08 62.4 55 63.6
Gohir.A07G077100 Gossypium hirsutum HOM05D003685 ORTHO05D003168 2.6e-08 61.6 51 58.8
Gohir.D07G081800 Gossypium hirsutum HOM05D003685 ORTHO05D003168 2.6e-08 61.6 51 58.8
LjContig00141g0023457 Lotus japonicus HOM05D003685 ORTHO05D003168 2.6e-08 61.6 54 61.1
Atru.chr1.1843 Acer truncatum HOM05D003685 ORTHO05D003168 3.4e-08 61.2 54 59.3
Prupe.3G160400 Prunus persica HOM05D003685 ORTHO05D003168 3.4e-08 61.2 51 60.8
Sc11g0008680 Simmondsia chinensis HOM05D003685 ORTHO05D003168 3.4e-08 61.2 55 58.2
HanXRQChr12g0375651 Helianthus annuus HOM05D003685 ORTHO05D003168 4.5e-08 60.8 51 60.8
TPR.G3491 Trifolium pratense HOM05D003685 ORTHO05D003168 4.5e-08 60.8 50 62.0
Lj6g0007365 Lotus japonicus HOM05D003685 ORTHO05D003168 5.8e-08 60.5 53 62.3
Lalb_Chr18g0053371 Lupinus albus HOM05D003685 ORTHO05D003168 5.8e-08 60.5 54 59.3
unitig_37.g12380 Utricularia gibba HOM05D000408 ORTHO05D000655 5.8e-08 60.5 51 54.9
Haze_16359 Corylus avellana HOM05D003685 ORTHO05D003168 7.6e-08 60.1 48 60.4
MELO3C030156.2 Cucumis melo HOM05D003685 ORTHO05D003168 7.6e-08 60.1 53 58.5
QL03p039371 Quercus lobata HOM05D003685 ORTHO05D003168 7.6e-08 60.1 54 61.1
Ciclev10013229m.g Citrus clementina HOM05D003685 ORTHO05D003168 1.0e-07 59.7 64 48.4
PGR042G0188 Punica granatum HOM05D003685 ORTHO05D003168 1.0e-07 59.7 47 63.8
CiPaw.04G046300 Carya illinoinensis HOM05D003685 ORTHO05D003168 1.3e-07 59.3 48 60.4
Sc10g0000750 Simmondsia chinensis HOM05D003685 ORTHO05D003168 1.3e-07 59.3 42 66.7
TWI77G0488 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 1.3e-07 59.3 48 60.4
Sed0006736 Sechium edule HOM05D003685 ORTHO05D003168 1.7e-07 58.9 63 49.2
Ca_05785_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 2.2e-07 58.5 50 58.0
Ca_30988_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 2.2e-07 58.5 50 58.0
Lsat_1_v5_gn_3_81860 Lactuca sativa HOM05D003685 ORTHO05D003168 2.2e-07 58.5 53 60.4
MBI12_g30397_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D003168 2.9e-07 58.2 45 62.2
Nitab4.5_0002664g0060 Nicotiana tabacum HOM05D003685 ORTHO05D003168 2.9e-07 58.2 51 54.9
Nitab4.5_0009638g0020 Nicotiana tabacum HOM05D003685 ORTHO05D003168 3.8e-07 57.8 51 54.9
Peaxi162Scf00911g00004 Petunia axillaris HOM05D003685 ORTHO05D003168 3.8e-07 57.8 51 56.9
Peaxi162Scf02113g00006 Petunia axillaris HOM05D003685 ORTHO05D003168 3.8e-07 57.8 51 54.9
Nitab4.5_0003855g0030 Nicotiana tabacum HOM05D003685 ORTHO05D003168 4.9e-07 57.4 51 56.9
Psat2g041920 Pisum sativum HOM05D003685 ORTHO05D003168 4.9e-07 57.4 47 59.6
Glyma.14G216000 Glycine max HOM05D003685 ORTHO05D003168 6.5e-07 57.0 47 59.6
Rhsim08G0086900 Rhododendron simsii HOM05D003685 ORTHO05D003168 6.5e-07 57.0 55 56.4
SalBow3G2120 Salvia bowleyana HOM05D003685 ORTHO05D003168 6.5e-07 57.0 55 56.4
Actinidia36369 Actinidia chinensis HOM05D003685 ORTHO05D003168 8.4e-07 56.6 48 58.3
CAN.G1061.44 Capsicum annuum HOM05D003685 ORTHO05D003168 8.4e-07 56.6 51 52.9
AUR62023181 Chenopodium quinoa HOM05D003685 ORTHO05D003168 1.1e-06 56.2 43 62.8
Migut.L00461 Erythranthe guttata HOM05D003685 ORTHO05D003168 1.1e-06 56.2 50 54.0
MD17G1257600 Malus domestica HOM05D003685 ORTHO05D003168 1.1e-06 56.2 51 56.9
HPP92_003364 Vanilla planifolia HOM05D003685 ORTHO05D003168 1.1e-06 56.2 45 62.2
FvH4_1g28900 Fragaria vesca HOM05D003685 ORTHO05D003168 1.4e-06 55.8 51 56.9
FAN19G1718 Fragaria x ananassa HOM05D003685 ORTHO05D003168 1.4e-06 55.8 51 56.9
Lsat_1_v5_gn_2_79940 Lactuca sativa HOM05D003685 ORTHO05D003168 1.4e-06 55.8 43 65.1
Lalb_Chr17g0346151 Lupinus albus HOM05D003685 ORTHO05D003168 1.4e-06 55.8 51 54.9
arahy.Tifrunner.gnm1.ann1.20BG1F Arachis hypogaea HOM05D003685 ORTHO05D003168 1.9e-06 55.5 52 53.8
arahy.Tifrunner.gnm1.ann1.TR7VBX Arachis hypogaea HOM05D003685 ORTHO05D003168 1.9e-06 55.5 52 53.8
CsaV3_6G003680 Cucumis sativus L. HOM05D003685 ORTHO05D003168 1.9e-06 55.5 54 55.6
Duzib133G0562 Durio zibethinus HOM05D003685 ORTHO05D003168 1.9e-06 55.5 45 66.7
ECA246G1160 Erigeron canadensis HOM05D003685 ORTHO05D003168 1.9e-06 55.5 53 56.6
Glyma.11G217300 Glycine max HOM05D003685 ORTHO05D003168 1.9e-06 55.5 61 45.9
Nitab4.5_0000036g0480 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.9e-06 55.5 51 54.9
AUR62023227 Chenopodium quinoa HOM05D003685 ORTHO05D003168 2.5e-06 55.1 43 62.8
HanXRQChr15g0475431 Helianthus annuus HOM05D003685 ORTHO05D003168 2.5e-06 55.1 53 50.9
FAN23G1531 Fragaria x ananassa HOM05D003685 ORTHO05D003168 3.2e-06 54.7 51 56.9
Lalb_Chr10g0104461 Lupinus albus HOM05D003685 ORTHO05D003168 3.2e-06 54.7 45 60.0
Nn3g18248 Nelumbo nucifera HOM05D003685 ORTHO05D003168 3.2e-06 54.7 42 59.5
Sabra17G0106100 Salix brachista HOM05D003685 ORTHO05D003168 3.2e-06 54.7 44 63.6
Phvul.001G231100 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 4.2e-06 54.3 47 57.4
RcHm_v2.0_Chr3g0493401 Rosa chinensis HOM05D003685 ORTHO05D003168 4.2e-06 54.3 51 52.9
SalBow7G2561 Salvia bowleyana HOM05D003685 ORTHO05D003168 4.2e-06 54.3 50 54.0
Solyc02g063340.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 4.2e-06 54.3 45 60.0
Solyc02g091480.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 4.2e-06 54.3 51 51.0
Sopen02g014410 Solanum pennellii HOM05D003685 ORTHO05D003168 4.2e-06 54.3 45 60.0
PGSC0003DMG400010392 Solanum tuberosum HOM05D003685 ORTHO05D003168 4.2e-06 54.3 45 60.0
Lj4g0022454 Lotus japonicus HOM05D003685 ORTHO05D003168 5.5e-06 53.9 50 52.0
MBI04_g34112_MAGBIO Magnolia biondii HOM05D003685 ORTHO05D003168 5.5e-06 53.9 50 54.0
CAN.G1067.5 Capsicum annuum HOM05D003685 ORTHO05D003168 7.1e-06 53.5 51 51.0
Cfa002094 Carpinus fangiana HOM05D003685 ORTHO05D003168 7.1e-06 53.5 44 56.8
Phvul.008G234700 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 7.1e-06 53.5 48 60.4
Potri.017G126400 Populus trichocarpa HOM05D003685 ORTHO05D003168 7.1e-06 53.5 42 64.3
Glyma.02G245901 Glycine max HOM05D003685 ORTHO05D003168 9.3e-06 53.1 45 57.8
HanXRQChr14g0440341 Helianthus annuus HOM05D003685 ORTHO05D003168 9.3e-06 53.1 47 57.4
Lj9P420T29 Lonicera japonica HOM05D000135 ORTHO05D000203 9.3e-06 53.1 43 62.8


User provided reference genes

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