Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 5.8e-228 793.9 402 100.0
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.9e-224 781.2 406 98.3
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.4e-221 771.9 402 97.0
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.4e-221 771.9 402 97.0
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 5.3e-221 770.8 402 97.3
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 5.3e-213 744.2 401 94.0
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 2.1e-206 722.2 375 97.9
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.3e-198 696.4 411 84.7
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.8e-184 649.4 411 80.0
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 3.9e-184 648.3 415 80.7
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.4e-181 639.0 415 79.0
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.6e-180 635.6 402 81.6
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 5.9e-180 634.4 395 82.3
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 5.9e-180 634.4 395 82.3
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.9e-178 629.4 401 81.3
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 3.5e-172 608.6 357 85.2
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.1e-170 603.6 408 77.7
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 4.1e-165 585.1 411 72.3
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.0e-160 568.9 414 69.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.2e-142 509.6 359 71.0
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.6e-140 503.4 393 65.6
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.7e-139 500.0 350 70.9
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 4.3e-138 495.4 401 62.3
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 5.6e-138 495.0 346 69.9
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 9.5e-138 494.2 346 70.2
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-137 493.4 407 62.7
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.1e-137 493.0 347 70.6
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 4.7e-137 491.9 347 70.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.0e-137 491.1 346 69.4
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.4e-136 490.3 346 69.9
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.4e-136 490.3 324 72.2
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 3.1e-136 489.2 348 69.8
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 4.0e-136 488.8 325 74.8
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.2e-135 487.3 348 67.5
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.2e-135 487.3 325 74.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.2e-135 487.3 325 74.5
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 3.4e-135 485.7 361 67.0
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 4.4e-135 485.3 411 61.1
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 4.4e-135 485.3 320 72.8
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 7.5e-135 484.6 332 71.4
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 7.5e-135 484.6 353 67.4
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 7.5e-135 484.6 351 68.7
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.7e-134 483.4 329 71.7
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.9e-134 482.6 347 68.9
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 6.4e-134 481.5 348 67.8
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.9e-133 479.9 346 67.1
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 5.4e-133 478.4 351 68.7
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.2e-132 477.2 368 65.8
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.6e-132 476.9 367 65.7
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.0e-132 476.5 329 71.1
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 2.7e-132 476.1 351 67.5
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 4.6e-132 475.3 354 66.7
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 6.0e-132 474.9 318 73.0
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 6.0e-132 474.9 347 68.3
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 6.0e-132 474.9 344 68.6
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.3e-131 473.8 346 67.1
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.3e-131 473.0 328 68.9
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 2.3e-131 473.0 342 67.8
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 3.0e-131 472.6 332 70.2
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.1e-130 470.7 344 67.2
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.9e-130 469.9 317 72.6
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.3e-130 468.8 331 68.3
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-129 467.2 346 64.7
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-129 467.2 346 64.7
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.6e-129 466.8 319 68.7
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.8e-129 466.1 346 64.5
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.6e-129 465.7 382 60.2
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 3.6e-129 465.7 346 64.5
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 4.7e-129 465.3 344 65.7
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 6.2e-129 464.9 382 60.5
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.1e-128 464.2 345 66.4
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.8e-128 463.4 382 61.0
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.3e-128 463.0 332 67.5
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 4.0e-128 462.2 341 67.2
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 2.0e-127 459.9 314 70.7
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 7.5e-127 458.0 316 69.3
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 7.5e-127 458.0 318 70.4
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.7e-126 456.8 325 69.2
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.9e-126 456.1 377 60.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 4.9e-126 455.3 318 68.2
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.9e-125 453.4 314 69.1
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.4e-125 453.0 316 69.6
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.2e-125 452.6 315 68.3
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 5.4e-125 451.8 261 85.4
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 3.9e-123 445.7 321 68.5
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 3.9e-123 445.7 349 63.6
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.1e-122 444.1 339 61.7
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.3e-122 441.4 317 66.6
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 9.5e-122 441.0 349 61.6
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.6e-121 440.3 343 61.5
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 2.1e-121 439.9 324 66.0
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.1e-121 439.9 322 65.5
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 6.8e-120 434.9 329 63.5
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 4.1e-117 425.6 406 55.7
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.1e-117 424.9 377 56.8
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 8.6e-115 417.9 345 60.0
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 8.6e-115 417.9 353 61.2
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 9.6e-114 414.5 337 61.4
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.6e-113 413.7 423 52.5
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.6e-111 404.8 270 72.6
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.9e-110 402.9 306 66.3
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 5.4e-109 398.7 327 64.8
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 3.5e-108 396.0 355 58.9
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 7.8e-108 394.8 269 69.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 3.6e-105 386.0 307 60.6
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 4.0e-104 382.5 277 68.2
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 4.0e-104 382.5 316 59.2
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 7.6e-103 378.3 317 61.8
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 9.3e-101 371.3 283 67.1
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 4.6e-100 369.0 299 61.9
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 7.4e-98 361.7 318 56.3
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 3.6e-97 359.4 520 41.7
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 2.3e-91 340.1 329 52.6
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.6e-89 334.0 332 53.0
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.1e-89 333.6 346 54.0
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.1e-89 333.6 326 52.8
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.1e-88 329.7 332 51.8
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 1.5e-82 310.8 216 71.3
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 5.9e-79 298.9 233 70.8
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.5e-77 293.5 220 59.5
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.7e-76 290.0 267 56.6
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 7.9e-76 288.5 224 63.4
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 8.7e-75 285.0 218 62.8
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 2.3e-67 260.4 173 69.9
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.1e-66 258.1 202 66.3
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 2.6e-66 256.9 224 60.3
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.7e-65 254.2 181 73.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 7.7e-63 245.4 202 63.4
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.1e-60 237.3 244 52.0
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 5.3e-56 222.6 117 85.5
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.7e-50 201.8 224 50.4
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.1e-40 171.8 303 34.0
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.9e-37 161.0 318 31.8
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 8.0e-36 155.6 150 50.0
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 4.0e-35 153.3 93 74.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 9.2e-32 142.1 314 32.8
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.9e-29 134.4 84 73.8
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 5.4e-24 116.3 98 50.0
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 2.6e-18 97.4 95 49.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 3.2e-16 90.5 81 67.9
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 7.3e-13 79.3 63 60.3
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 4.7e-12 76.6 189 28.0


User provided reference genes

Program Settings