Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 1.0e-91 340.1 184 100.0
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 2.3e-78 295.8 184 89.7
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 7.3e-77 290.8 179 90.5
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 1.2e-74 283.5 176 89.2
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 2.6e-74 282.3 176 89.2
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 4.4e-74 281.6 184 84.8
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 3.9e-70 268.5 184 83.2
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 3.9e-70 268.5 184 82.6
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 1.9e-69 266.2 185 82.7
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 9.6e-69 263.8 184 81.0
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 2.8e-68 262.3 184 81.0
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 2.8e-68 262.3 185 81.1
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 2.8e-68 262.3 184 81.0
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 2.8e-68 262.3 185 81.1
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 4.7e-68 261.5 184 80.4
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 1.8e-67 259.6 184 82.1
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 2.4e-64 249.2 184 79.9
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 2.5e-53 212.6 185 69.7
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 9.9e-50 200.7 186 65.6
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 1.6e-39 166.8 187 55.1
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 7.9e-39 164.5 136 73.5
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 2.5e-37 159.5 182 56.0
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 1.6e-36 156.8 179 55.3
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 2.1e-36 156.4 184 54.9
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 2.8e-36 156.0 160 60.0
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 4.8e-36 155.2 191 54.5
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 1.1e-35 154.1 122 67.2
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 4.1e-35 152.1 140 62.1
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 6.9e-35 151.4 149 61.1
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 9.0e-35 151.0 188 53.7
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 1.2e-34 150.6 96 79.2
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 1.2e-34 150.6 96 79.2
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 1.5e-34 150.2 96 79.2
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 1.5e-34 150.2 147 59.2
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 2.0e-34 149.8 189 52.9
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 2.6e-34 149.4 96 78.1
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 3.4e-34 149.1 95 78.9
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 3.4e-34 149.1 195 49.2
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 4.5e-34 148.7 95 80.0
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 4.5e-34 148.7 177 54.2
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 5.8e-34 148.3 95 77.9
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 5.8e-34 148.3 182 52.7
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 7.6e-34 147.9 189 52.4
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 7.6e-34 147.9 95 77.9
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 1.0e-33 147.5 95 80.0
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 1.7e-33 146.7 173 52.0
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 1.7e-33 146.7 188 52.7
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 2.2e-33 146.4 96 78.1
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 2.9e-33 146.0 96 78.1
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 2.9e-33 146.0 95 76.8
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 2.9e-33 146.0 95 76.8
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 2.9e-33 146.0 95 76.8
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 2.9e-33 146.0 95 77.9
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 3.8e-33 145.6 174 53.4
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 3.8e-33 145.6 167 53.9
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 3.8e-33 145.6 93 79.6
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 5.0e-33 145.2 96 76.0
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 6.5e-33 144.8 91 80.2
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 6.5e-33 144.8 174 52.3
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.1e-32 144.1 186 53.2
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 1.1e-32 144.1 153 56.2
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 1.9e-32 143.3 99 73.7
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 1.9e-32 143.3 167 52.1
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 3.2e-32 142.5 95 78.9
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 4.2e-32 142.1 181 50.3
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 5.5e-32 141.7 95 77.9
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 7.2e-32 141.4 106 71.7
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 7.2e-32 141.4 95 77.9
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 1.2e-31 140.6 135 58.5
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 1.6e-31 140.2 95 76.8
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 2.7e-31 139.4 96 76.0
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 2.7e-31 139.4 95 73.7
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 3.5e-31 139.0 95 74.7
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 6.1e-31 138.3 95 69.5
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 1.0e-30 137.5 95 72.6
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 1.8e-30 136.7 185 53.0
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 3.0e-30 136.0 86 77.9
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 3.0e-30 136.0 96 76.0
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 3.9e-30 135.6 89 78.7
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 3.9e-30 135.6 99 65.7
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 6.7e-30 134.8 115 65.2
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 8.7e-30 134.4 96 75.0
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 1.1e-29 134.0 97 73.2
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 1.1e-29 134.0 132 57.6
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 1.9e-29 133.3 160 52.5
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 2.5e-29 132.9 86 76.7
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 2.5e-29 132.9 97 71.1
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 2.5e-29 132.9 109 66.1
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 3.3e-29 132.5 135 56.3
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 3.3e-29 132.5 96 70.8
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 7.4e-29 131.3 86 76.7
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 3.7e-28 129.0 185 48.6
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 1.1e-27 127.5 92 75.0
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 1.8e-27 126.7 75 84.0
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 3.1e-27 125.9 75 84.0
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 3.1e-27 125.9 144 53.5
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 2.0e-26 123.2 95 64.2
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 2.6e-26 122.9 175 47.4
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 2.6e-26 122.9 164 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 1.7e-25 120.2 91 63.7
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 3.8e-25 119.0 160 47.5
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 3.8e-25 119.0 84 69.0
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 2.5e-24 116.3 232 41.8
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 2.5e-24 116.3 84 69.0
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 5.5e-24 115.2 73 78.1
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 6.1e-23 111.7 75 76.0
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 5.7e-21 105.1 158 45.6
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 2.4e-19 99.8 82 59.8
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 6.5e-17 91.7 100 47.0
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 9.4e-16 87.8 77 59.7
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.9e-14 82.4 45 84.4
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.9e-14 82.4 45 84.4
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 1.1e-13 80.9 45 86.7
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 1.5e-13 80.5 72 48.6
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 2.0e-13 80.1 143 44.1
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 2.6e-13 79.7 59 66.1
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 7.4e-13 78.2 86 53.5
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 2.2e-09 66.6 65 58.5
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 8.5e-09 64.7 47 78.7
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 3.2e-08 62.8 74 54.1
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 1.2e-07 60.8 39 79.5
AL3G13180 Arabidopsis lyrata HOM05D058763 ORTHO05D079728 2.7e-07 59.7 58 56.9
Pp3c5_25080 Physcomitrium patens HOM05D002854 ORTHO05D003051 2.3e-06 56.6 90 38.9
Sopen12g007810 Solanum pennellii HOM05D002854 ORTHO05D003051 4.0e-06 55.8 113 36.3
Aa31LG5G14020 Aethionema arabicum HOM05D006461 ORTHO05D008199 6.7e-06 55.1 109 45.0
PGSC0003DMG402029805 Solanum tuberosum HOM05D002854 ORTHO05D003051 6.7e-06 55.1 113 37.2
BcaNung02408 Brassica carinata HOM05D002854 ORTHO05D003051 8.8e-06 54.7 89 39.3


User provided reference genes

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