Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 1.1e-33 146.0 71 100.0
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 2.3e-26 121.7 58 96.6
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 9.8e-22 106.3 58 87.9
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 9.8e-22 106.3 58 87.9
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 1.3e-21 105.9 58 89.7
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 8.3e-21 103.2 58 84.5
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 1.9e-20 102.1 58 84.5
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 1.9e-20 102.1 58 84.5
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 4.1e-20 100.9 58 86.2
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 7.0e-20 100.1 58 81.0
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 1.5e-17 92.4 59 81.4
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 4.7e-16 87.4 59 78.0
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 1.3e-13 79.3 60 71.7
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 3.7e-13 77.8 56 67.9
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 4.9e-13 77.4 58 65.5
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 8.3e-13 76.6 42 81.0
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 1.9e-12 75.5 56 64.3
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 5.4e-12 73.9 61 60.7
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 7.1e-12 73.6 53 66.0
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 7.1e-12 73.6 60 63.3
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 9.2e-12 73.2 45 77.8
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 1.2e-11 72.8 44 75.0
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 1.2e-11 72.8 51 68.6
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 2.1e-11 72.0 60 66.7
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 2.1e-11 72.0 55 61.8
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 2.7e-11 71.6 57 64.9
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 3.5e-11 71.2 62 61.3
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 3.5e-11 71.2 62 61.3
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 6.0e-11 70.5 64 54.7
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 6.0e-11 70.5 60 58.3
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 7.8e-11 70.1 64 59.4
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 7.8e-11 70.1 60 58.3
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 1.0e-10 69.7 42 71.4
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 1.0e-10 69.7 42 71.4
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.3e-10 69.3 62 58.1
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 1.3e-10 69.3 43 69.8
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 1.7e-10 68.9 60 65.0
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 1.7e-10 68.9 39 79.5
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 2.3e-10 68.6 41 73.2
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 2.3e-10 68.6 39 76.9
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 2.3e-10 68.6 49 63.3
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 3.0e-10 68.2 39 76.9
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 3.0e-10 68.2 42 73.8
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 3.0e-10 68.2 52 61.5
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 3.0e-10 68.2 57 52.6
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 3.0e-10 68.2 63 54.0
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 3.9e-10 67.8 53 62.3
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 3.9e-10 67.8 62 59.7
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 3.9e-10 67.8 67 50.7
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 3.9e-10 67.8 54 63.0
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 6.6e-10 67.0 42 69.0
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 6.6e-10 67.0 42 69.0
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 6.6e-10 67.0 41 73.2
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 1.1e-09 66.2 65 58.5
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 1.1e-09 66.2 61 55.7
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 1.5e-09 65.9 53 58.5
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 1.5e-09 65.9 42 69.0
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 1.5e-09 65.9 51 64.7
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 2.5e-09 65.1 64 46.9
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 4.3e-09 64.3 59 54.2
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 4.3e-09 64.3 56 53.6
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 5.6e-09 63.9 39 71.8
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 5.6e-09 63.9 47 61.7
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 5.6e-09 63.9 39 69.2
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 7.3e-09 63.5 60 58.3
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 7.3e-09 63.5 39 69.2
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 9.5e-09 63.2 42 64.3
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 9.5e-09 63.2 39 69.2
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 9.5e-09 63.2 42 66.7
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 1.2e-08 62.8 53 56.6
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 1.2e-08 62.8 39 69.2
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 2.8e-08 61.6 36 75.0
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 2.8e-08 61.6 41 61.0
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 3.6e-08 61.2 42 64.3
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 3.6e-08 61.2 61 55.7
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 6.2e-08 60.5 66 47.0
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 6.2e-08 60.5 66 47.0
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 6.2e-08 60.5 56 51.8
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 6.2e-08 60.5 36 69.4
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 6.2e-08 60.5 42 54.8
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 1.4e-07 59.3 49 61.2
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 1.4e-07 59.3 63 50.8
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 2.4e-07 58.5 43 62.8
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 2.4e-07 58.5 45 60.0
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 3.1e-07 58.2 31 83.9
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 4.0e-07 57.8 43 62.8
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 4.0e-07 57.8 44 61.4
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 8.9e-07 56.6 31 77.4
Peaxi162Scf00095g00411 Petunia axillaris HOM05D007586 ORTHO05D009554 1.2e-06 56.2 43 67.4
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.5e-06 55.8 56 48.2
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 3.4e-06 54.7 30 76.7


User provided reference genes

Program Settings