Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 8.7e-53 209.9 98 100.0
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 4.3e-52 207.6 98 99.0
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.4e-13 79.7 91 53.8
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 5.2e-13 77.8 91 53.8
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.5e-12 76.3 91 52.7
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.6e-12 75.5 91 51.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 2.6e-12 75.5 91 52.7
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.6e-12 75.5 91 52.7
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 2.6e-12 75.5 91 52.7
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 2.6e-12 75.5 91 52.7
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.6e-12 75.5 91 52.7
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 9.8e-12 73.6 91 51.6
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 9.8e-12 73.6 91 51.6
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-11 72.8 90 48.9
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-11 72.8 90 48.9
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-11 72.8 90 48.9
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.2e-11 72.4 90 48.9
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.7e-11 71.6 90 47.8
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.7e-11 71.6 91 48.4
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 6.3e-11 70.9 91 47.3
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 6.3e-11 70.9 91 47.3
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 6.3e-11 70.9 91 47.3
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 6.3e-11 70.9 91 47.3
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 8.3e-11 70.5 90 46.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.1e-10 70.1 90 47.8
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.4e-10 69.7 90 46.7
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.8e-10 69.3 34 82.4
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 4.1e-10 68.2 91 44.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.4e-10 67.8 90 46.7
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.6e-09 66.2 90 46.7
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.0e-08 63.5 101 39.6
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 5.0e-08 61.2 89 39.3
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 6.5e-08 60.8 91 41.8
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 8.5e-08 60.5 90 44.4
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.1e-07 60.1 98 39.8
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.1e-07 60.1 91 41.8
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.5e-07 59.7 90 42.2
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.9e-07 59.3 90 42.2
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.9e-07 59.3 90 43.3
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.5e-07 58.9 90 43.3
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 4.2e-07 58.2 90 42.2
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 4.2e-07 58.2 91 41.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 5.5e-07 57.8 89 41.6
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.5e-07 57.8 89 41.6
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.5e-07 57.8 89 41.6
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 5.5e-07 57.8 91 40.7
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 5.5e-07 57.8 89 41.6
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.5e-07 57.8 89 41.6
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 7.2e-07 57.4 92 41.3
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.2e-07 57.4 89 41.6
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 7.2e-07 57.4 90 41.1
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 7.2e-07 57.4 89 41.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 9.4e-07 57.0 91 38.5
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.2e-06 56.6 90 38.9
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.6e-06 56.2 89 39.3
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.6e-06 56.2 90 38.9
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 2.1e-06 55.8 101 37.6
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.1e-06 55.8 90 38.9
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 2.1e-06 55.8 90 40.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 2.1e-06 55.8 89 42.7
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 2.1e-06 55.8 100 38.0
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.1e-06 55.8 90 37.8
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.1e-06 55.8 91 40.7
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 2.7e-06 55.5 89 42.7
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 3.6e-06 55.1 100 38.0
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 3.6e-06 55.1 89 39.3
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 3.6e-06 55.1 118 34.7
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.7e-06 54.7 96 38.5
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 6.1e-06 54.3 32 68.8
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.1e-06 54.3 96 37.5
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 6.1e-06 54.3 96 37.5
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.1e-06 54.3 89 41.6
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 8.0e-06 53.9 101 36.6
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 8.0e-06 53.9 89 39.3
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 8.0e-06 53.9 100 37.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 8.0e-06 53.9 89 41.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 8.0e-06 53.9 102 37.3
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 8.0e-06 53.9 89 38.2
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 8.0e-06 53.9 88 38.6
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 8.0e-06 53.9 89 39.3


User provided reference genes

Program Settings