Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 0.0e+00 2389.4 1253 100.0
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 0.0e+00 2135.9 1253 91.2
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 0.0e+00 2133.2 1256 90.8
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 0.0e+00 2098.9 1258 89.8
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 0.0e+00 1600.1 1286 70.5
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 0.0e+00 1348.6 1324 60.3
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 0.0e+00 1250.7 1340 56.8
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 0.0e+00 1228.8 1359 56.6
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 0.0e+00 1214.9 1340 56.4
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 0.0e+00 1190.6 1331 55.5
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 4.3e-205 719.5 1360 40.0
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 2.3e-137 494.6 1370 33.4
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 5.5e-67 260.8 1414 26.0
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 3.9e-65 254.6 1485 27.1
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 5.7e-64 250.8 1451 26.4
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.3e-63 249.6 1415 26.0
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 7.2e-59 233.8 1283 26.3
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 3.7e-55 221.5 1400 27.1
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 4.8e-55 221.1 1532 26.1
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 1.8e-54 219.2 1417 27.0
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.5e-51 208.8 1344 27.0
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 3.4e-48 198.4 1329 26.2
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 3.1e-46 191.8 1525 24.1
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 1.0e-44 186.8 1339 25.5
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 1.2e-42 179.9 560 33.2
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 1.8e-41 176.0 496 34.9
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 5.2e-41 174.5 1413 25.5
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 4.1e-38 164.9 1327 25.3
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 7.8e-37 160.6 1428 25.4
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.9e-35 156.0 1302 25.0
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 5.6e-35 154.5 1376 25.9
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 1.2e-34 153.3 1474 23.9
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 2.1e-34 152.5 1495 24.2
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.2e-32 146.7 1336 25.2
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 2.4e-30 139.0 1282 24.4
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 2.7e-29 135.6 1369 24.8
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 3.5e-29 135.2 1364 24.9
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 7.8e-29 134.0 236 42.8
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.0e-28 133.7 1259 23.7
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.0e-28 133.7 1406 25.2
BcaB05g22624 Brassica carinata HOM05D006507 ORTHO05D007296 1.7e-28 132.9 118 61.0
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 3.9e-28 131.7 1243 25.1
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 1.5e-27 129.8 100 66.0
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 1.9e-27 129.4 1370 24.5
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 3.3e-27 128.6 656 28.0
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 5.6e-27 127.9 210 41.0
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 9.5e-27 127.1 1369 23.2
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 8.0e-26 124.0 1222 24.1
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 2.3e-25 122.5 1391 23.7
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 5.2e-25 121.3 76 72.4
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 1.5e-24 119.8 559 30.6
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 5.8e-24 117.9 117 55.6
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 3.7e-23 115.2 123 52.0
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 6.4e-23 114.4 113 53.1
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 6.4e-23 114.4 1224 22.7
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 1.4e-22 113.2 69 75.4
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 1.9e-22 112.8 96 61.5
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 2.4e-22 112.5 110 53.6
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 3.2e-22 112.1 1395 24.2
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 4.1e-22 111.7 143 46.2
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.1e-22 111.7 129 51.2
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 5.4e-22 111.3 73 71.2
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 5.4e-22 111.3 1395 23.9
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 5.4e-22 111.3 229 36.2
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 7.0e-22 110.9 97 56.7
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 1.2e-21 110.2 69 72.5
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.6e-21 109.8 68 76.5
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 1.6e-21 109.8 403 28.5
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.6e-21 109.8 90 60.0
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 7.8e-21 107.5 1399 23.9
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 7.8e-21 107.5 79 62.0
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 1.3e-20 106.7 72 66.7
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 2.3e-20 105.9 309 31.7
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 2.3e-20 105.9 432 26.9
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 6.6e-20 104.4 92 56.5
BcaB05g22625 Brassica carinata HOM05D006507 ORTHO05D007296 1.9e-19 102.8 88 65.9
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 3.3e-19 102.1 518 25.3
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 4.3e-19 101.7 68 70.6
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 9.5e-19 100.5 267 33.3
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.6e-18 99.8 1162 23.5
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.6e-18 99.8 84 61.9
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 2.1e-18 99.4 68 69.1
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.8e-18 99.0 289 32.2
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 3.6e-18 98.6 141 43.3
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 1.4e-17 96.7 410 34.1
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 2.3e-17 95.9 1359 23.3
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 2.3e-17 95.9 277 36.8
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 1.5e-16 93.2 1258 24.2
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 2.6e-16 92.4 127 42.5
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 4.4e-16 91.7 1261 23.2
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 1.7e-15 89.7 163 41.1
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.1e-14 87.0 94 54.3
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 1.1e-14 87.0 1231 22.8
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 1.4e-14 86.7 1599 21.8
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.2e-14 85.5 86 51.2
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 2.7e-13 82.4 547 26.9
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 4.6e-13 81.6 202 37.1
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 1.3e-12 80.1 165 38.2
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 8.6e-12 77.4 75 54.7
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 1.5e-11 76.6 137 41.6
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.5e-11 75.9 54 61.1
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 3.3e-11 75.5 1384 22.3
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 9.5e-11 73.9 107 37.4
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 1.2e-10 73.6 43 72.1
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 1.2e-10 73.6 507 27.2
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-10 72.8 170 35.9
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 3.6e-10 72.0 240 34.6
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.7e-10 71.6 78 55.1
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 4.7e-10 71.6 1265 22.7
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 6.2e-10 71.2 590 25.6
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.8e-09 69.7 180 37.2
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 1.5e-08 66.6 61 55.7
CBR_g19214 Chara braunii HOM05D006507 ORTHO05D007296 1.3e-07 63.5 65 50.8
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.9e-07 62.4 191 30.9
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 6.4e-07 61.2 121 38.8
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 6.4e-07 61.2 94 45.7
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 8.4e-07 60.8 98 40.8
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 9.2e-06 57.4 372 27.2


User provided reference genes

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