Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p16980 Brassica napus HOM05D002619 ORTHO05D002804 6.5e-110 401.0 240 100.0
C09p52230 Brassica napus HOM05D002619 ORTHO05D002804 6.5e-102 374.4 240 82.5
BcaC04g19626 Brassica carinata HOM05D002619 ORTHO05D002804 1.5e-101 373.2 240 83.3
BraA10t43782Z Brassica rapa HOM05D002619 ORTHO05D002804 3.6e-92 342.0 241 83.4
BcaB08g36223 Brassica carinata HOM05D002619 ORTHO05D002804 5.8e-82 308.1 243 81.9
Sp6g21430 Schrenkiella parvula HOM05D002619 ORTHO05D002804 1.4e-80 303.5 243 70.8
C02p12190 Brassica napus HOM05D002619 ORTHO05D002804 2.1e-76 289.7 240 75.4
Thhalv10014545m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 4.9e-73 278.5 245 71.8
CARHR273340 Cardamine hirsuta HOM05D002619 ORTHO05D002804 6.0e-71 271.6 241 73.0
AT5G59760 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 1.5e-69 266.9 241 69.7
BolC2t07321H Brassica oleracea HOM05D002619 ORTHO05D002804 5.8e-66 255.0 240 75.0
BcaB05g22574 Brassica carinata HOM05D002619 ORTHO05D002804 6.4e-65 251.5 240 69.2
AL8G36280 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 3.9e-62 242.3 240 68.3
BraA02t05769Z Brassica rapa HOM05D002619 ORTHO05D002804 1.9e-61 240.0 243 72.8
A02p06890 Brassica napus HOM05D002619 ORTHO05D002804 1.1e-59 234.2 243 72.0
Carub.0008s2042 Capsella rubella HOM05D002619 ORTHO05D002804 7.6e-58 228.0 224 70.1
Aa31sc23G210 Aethionema arabicum HOM05D002619 ORTHO05D002804 1.6e-44 183.7 241 58.9
THA.LOC104814869 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 1.9e-32 143.7 240 41.7
Thhalv10017181m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 1.5e-21 107.5 203 44.8
AT2G28690 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 2.5e-21 106.7 194 43.8
Carub.0004s0969 Capsella rubella HOM05D002619 ORTHO05D002804 2.5e-21 106.7 246 39.4
CARHR121800 Cardamine hirsuta HOM05D002619 ORTHO05D002804 3.3e-21 106.3 193 43.5
C04p22400 Brassica napus HOM05D002619 ORTHO05D002804 2.2e-20 103.6 202 44.1
BcaB02g10192 Brassica carinata HOM05D002619 ORTHO05D002804 3.7e-20 102.8 248 39.1
BraA07t29626Z Brassica rapa HOM05D002619 ORTHO05D002804 6.3e-20 102.1 250 38.4
A07p19190 Brassica napus HOM05D002619 ORTHO05D002804 8.2e-20 101.7 250 38.8
Dinv26273 Davidia involucrata HOM05D002619 ORTHO05D002804 1.1e-19 101.3 249 40.6
BolC4t23756H Brassica oleracea HOM05D002619 ORTHO05D002804 1.4e-19 100.9 202 43.1
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 1.4e-19 100.9 191 38.2
Sp4g11560 Schrenkiella parvula HOM05D002619 ORTHO05D002804 6.9e-19 98.6 193 44.0
Gohir.A13G229100 Gossypium hirsutum HOM05D002619 ORTHO05D002804 2.0e-18 97.1 236 34.3
Gohir.D13G234700 Gossypium hirsutum HOM05D002619 ORTHO05D002804 5.9e-18 95.5 254 37.8
Gorai.013G265500 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.7e-17 94.0 253 36.4
GSVIVG01025039001 Vitis vinifera HOM05D002619 ORTHO05D002804 1.9e-16 90.5 244 36.5
Cpa.g.sc252.23 Carica papaya HOM05D002619 ORTHO05D002804 3.2e-16 89.7 319 35.4
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 5.5e-16 89.0 307 33.2
AL4G23230 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 7.2e-16 88.6 186 43.0
BcaC02g10992 Brassica carinata HOM05D002619 ORTHO05D002804 7.2e-16 88.6 194 42.3
COL.COLO4_18442 Corchorus olitorius HOM05D002619 ORTHO05D002804 1.2e-15 87.8 249 35.7
THA.LOC104815768 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 4.7e-15 85.9 233 38.2
THA.LOC104800642 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 6.1e-15 85.5 277 35.7
BcaB01g03117 Brassica carinata HOM05D002619 ORTHO05D002804 1.0e-14 84.7 198 39.4
BcaNung06778 Brassica carinata HOM05D002619 ORTHO05D002804 1.0e-14 84.7 198 39.4
Peaxi162Scf00406g00012 Petunia axillaris HOM05D002619 ORTHO05D002804 1.0e-14 84.7 221 36.7
TAR623G0548 Trochodendron aralioides HOM05D002619 ORTHO05D002804 1.4e-14 84.3 252 34.1
CiPaw.14G072600 Carya illinoinensis HOM05D002619 ORTHO05D002804 1.8e-14 84.0 319 34.5
PGR102G0064 Punica granatum HOM05D002619 ORTHO05D002804 1.8e-14 84.0 227 33.0
Thecc.09G328300 Theobroma cacao HOM05D002619 ORTHO05D002804 8.8e-14 81.6 314 31.8
Actinidia03780 Actinidia chinensis HOM05D002619 ORTHO05D002804 1.1e-13 81.3 254 37.0
Cfa011444 Carpinus fangiana HOM05D002619 ORTHO05D002804 1.5e-13 80.9 253 34.8
Actinidia37246 Actinidia chinensis HOM05D002619 ORTHO05D002804 2.0e-13 80.5 285 33.7
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 2.0e-13 80.5 254 30.7
CiPaw.13G099700 Carya illinoinensis HOM05D002619 ORTHO05D002804 4.4e-13 79.3 242 35.1
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 4.4e-13 79.3 285 28.4
CAN.G820.11 Capsicum annuum HOM05D002619 ORTHO05D002804 5.7e-13 79.0 258 31.0
Peaxi162Scf00406g00007 Petunia axillaris HOM05D002619 ORTHO05D002804 5.7e-13 79.0 288 27.8
Sed0011374 Sechium edule HOM05D002619 ORTHO05D002804 5.7e-13 79.0 246 34.6
PGSC0003DMG400010881 Solanum tuberosum HOM05D002619 ORTHO05D002804 5.7e-13 79.0 231 32.9
Sed0021945 Sechium edule HOM05D002619 ORTHO05D002804 7.4e-13 78.6 249 35.7
Solyc06g005300.4 Solanum lycopersicum HOM05D002619 ORTHO05D002804 7.4e-13 78.6 212 34.0
Aa31LG5G7520 Aethionema arabicum HOM05D002619 ORTHO05D002804 1.3e-12 77.8 222 35.6
CSS0041199 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 1.3e-12 77.8 247 34.0
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.7e-12 77.4 276 29.3
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 2.2e-12 77.0 291 27.5
Duzib170G0200 Durio zibethinus HOM05D002619 ORTHO05D002804 2.8e-12 76.6 244 34.0
Eucgr.B02404 Eucalyptus grandis HOM05D002619 ORTHO05D002804 4.8e-12 75.9 244 32.8
THA.LOC104826341 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 4.8e-12 75.9 277 29.6
Lsat_1_v5_gn_5_166460 Lactuca sativa HOM05D002619 ORTHO05D002804 6.3e-12 75.5 223 33.6
ClCG02G020460 Citrullus lanatus HOM05D002619 ORTHO05D002804 8.2e-12 75.1 232 32.8
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 8.2e-12 75.1 241 31.5
MELO3C013675.2 Cucumis melo HOM05D002619 ORTHO05D002804 1.1e-11 74.7 248 32.7
QL01p033488 Quercus lobata HOM05D002619 ORTHO05D002804 1.1e-11 74.7 250 34.0
Sabra16G0141400 Salix brachista HOM05D002619 ORTHO05D002804 1.4e-11 74.3 279 33.0
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 2.4e-11 73.6 293 31.7
Manes.11G134700 Manihot esculenta HOM05D002619 ORTHO05D002804 2.4e-11 73.6 272 32.7
CsaV3_1G033710 Cucumis sativus L. HOM05D002619 ORTHO05D002804 3.1e-11 73.2 262 33.6
Prupe.6G085300 Prunus persica HOM05D002619 ORTHO05D002804 3.1e-11 73.2 327 32.1
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 4.1e-11 72.8 276 29.0
CsaV3_6G022160 Cucumis sativus L. HOM05D002619 ORTHO05D002804 5.3e-11 72.4 253 32.4
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 6.9e-11 72.0 207 34.3
vmacro03117 Vaccinium macrocarpon HOM05D002619 ORTHO05D002804 6.9e-11 72.0 281 35.2
ClCG03G001850 Citrullus lanatus HOM05D002619 ORTHO05D002804 9.1e-11 71.6 253 33.2
ECA248G0080 Erigeron canadensis HOM05D002619 ORTHO05D002804 9.1e-11 71.6 239 34.3
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 9.1e-11 71.6 238 29.8
Rhsim13G0087400 Rhododendron simsii HOM05D002619 ORTHO05D002804 9.1e-11 71.6 205 34.6
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.2e-10 71.2 252 29.8
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.5e-10 70.9 216 34.3
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.5e-10 70.9 239 30.1
Nn2g10492 Nelumbo nucifera HOM05D002619 ORTHO05D002804 2.0e-10 70.5 254 33.9
Potri.001G235200 Populus trichocarpa HOM05D002619 ORTHO05D002804 3.4e-10 69.7 278 29.1
TAR633G1544 Trochodendron aralioides HOM05D002619 ORTHO05D002804 3.4e-10 69.7 248 31.9
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 4.5e-10 69.3 261 31.0
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.5e-10 69.3 210 30.0
TWI75G1695 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 5.9e-10 68.9 229 33.6
MELO3C020695.2 Cucumis melo HOM05D002619 ORTHO05D002804 7.7e-10 68.6 193 35.8
Nitab4.5_0011620g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 7.7e-10 68.6 226 34.1
Potri.006G256801 Populus trichocarpa HOM05D002619 ORTHO05D002804 7.7e-10 68.6 221 34.8
Hund05001 Selenicereus undatus HOM05D002619 ORTHO05D002804 7.7e-10 68.6 232 28.9
Sopen06g001280 Solanum pennellii HOM05D002619 ORTHO05D002804 7.7e-10 68.6 201 33.8
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 1.0e-09 68.2 231 33.8
Oeu062318.1 Olea europaea HOM05D002619 ORTHO05D002804 1.0e-09 68.2 235 29.4
Lj1A161T60 Lonicera japonica HOM05D002619 ORTHO05D002804 1.3e-09 67.8 191 30.4
TWI31G0042 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.7e-09 67.4 234 26.1
Oeu040288.1 Olea europaea HOM05D002619 ORTHO05D002804 2.9e-09 66.6 200 34.5
Gorai.001G107800 Gossypium raimondii HOM05D002619 ORTHO05D002804 6.5e-09 65.5 164 32.3
Atru.chr3.3814 Acer truncatum HOM05D002619 ORTHO05D002804 8.5e-09 65.1 66 53.0
SalBow2G0511 Salvia bowleyana HOM05D002619 ORTHO05D002804 8.5e-09 65.1 198 35.4
TWI79G1700 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 8.5e-09 65.1 234 32.5
PSO206G0036 Papaver somniferum HOM05D002619 ORTHO05D002804 1.4e-08 64.3 245 30.2
Rhsim01G0224500 Rhododendron simsii HOM05D002619 ORTHO05D002804 1.4e-08 64.3 199 38.2
Nitab4.5_0000070g0090 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.9e-08 63.9 221 33.0
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.9e-08 63.9 220 27.3
HanXRQChr01g0009911 Helianthus annuus HOM05D002619 ORTHO05D002804 2.5e-08 63.5 218 28.9
Gohir.D07G099900 Gossypium hirsutum HOM05D002619 ORTHO05D002804 4.2e-08 62.8 65 50.8
PSO339G4672 Papaver somniferum HOM05D002619 ORTHO05D002804 4.2e-08 62.8 245 29.4
RcHm_v2.0_Chr5g0062781 Rosa chinensis HOM05D002619 ORTHO05D002804 4.2e-08 62.8 253 27.7
SalBow1G2722 Salvia bowleyana HOM05D002619 ORTHO05D002804 4.2e-08 62.8 184 27.7
SalBow3G1374 Salvia bowleyana HOM05D002619 ORTHO05D002804 4.2e-08 62.8 184 27.7
TAR369G0856 Trochodendron aralioides HOM05D002619 ORTHO05D002804 4.2e-08 62.8 254 31.1
Hund18942 Selenicereus undatus HOM05D002619 ORTHO05D002804 5.5e-08 62.4 237 29.5
CAN.G241.40 Capsicum annuum HOM05D002619 ORTHO05D002804 7.2e-08 62.0 225 32.9
Eucgr.B00641 Eucalyptus grandis HOM05D002619 ORTHO05D002804 7.2e-08 62.0 218 35.8
Cc01_g04170 Coffea canephora HOM05D002619 ORTHO05D002804 9.4e-08 61.6 283 26.1
MBI05_g38495_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 1.6e-07 60.8 249 32.9
MD01G1100200 Malus domestica HOM05D002307 ORTHO05D002378 1.6e-07 60.8 176 38.1
Sc12g0001720 Simmondsia chinensis HOM05D002619 ORTHO05D002804 1.6e-07 60.8 255 30.2
SGA_v2.0_scaffold134G34714 Striga asiatica HOM05D002619 ORTHO05D002804 1.6e-07 60.8 174 29.3
HPP92_012580 Vanilla planifolia HOM05D002619 ORTHO05D002804 1.6e-07 60.8 222 26.6
Carub.0004s0894 Capsella rubella HOM05D002307 ORTHO05D002378 2.7e-07 60.1 177 29.9
PGSC0003DMG400015562 Solanum tuberosum HOM05D002619 ORTHO05D002804 3.6e-07 59.7 262 29.0
Gohir.A03G038401 Gossypium hirsutum HOM05D002619 ORTHO05D002804 4.7e-07 59.3 65 47.7
HanXRQChr11g0340291 Helianthus annuus HOM05D002619 ORTHO05D002804 4.7e-07 59.3 227 25.6
MSTRG.12631 Avicennia marina HOM05D002619 ORTHO05D002804 8.0e-07 58.5 216 28.2
TWI59G0134 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 8.0e-07 58.5 217 31.3
MBI14_g29800_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 1.4e-06 57.8 251 31.9
Sabra06G0200800 Salix brachista HOM05D002619 ORTHO05D002804 1.4e-06 57.8 206 28.6
TPR.G34317 Trifolium pratense HOM05D002619 ORTHO05D002804 1.4e-06 57.8 213 29.1
MBI14_g44426_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 2.3e-06 57.0 245 31.0
EL10Ac7g15959 Beta vulgaris HOM05D002619 ORTHO05D002804 3.0e-06 56.6 234 26.9
CDE09G0663 Ceratophyllum demersum HOM05D002619 ORTHO05D002920 3.0e-06 56.6 180 36.1
AUR62009629 Chenopodium quinoa HOM05D002619 ORTHO05D002804 3.0e-06 56.6 244 28.3
CDE02G0555 Ceratophyllum demersum HOM05D002619 ORTHO05D002804 3.9e-06 56.2 196 34.7
AT2G28140 Arabidopsis thaliana HOM05D002307 ORTHO05D002378 6.7e-06 55.5 196 29.1
MD03G1100400 Malus domestica HOM05D002619 ORTHO05D002804 6.7e-06 55.5 320 29.1
Sopen11g030810 Solanum pennellii HOM05D002619 ORTHO05D002804 6.7e-06 55.5 170 29.4
CARHR120990 Cardamine hirsuta HOM05D002307 ORTHO05D002378 8.8e-06 55.1 178 28.7
FAN21G0578 Fragaria x ananassa HOM05D002619 ORTHO05D002804 8.8e-06 55.1 252 29.8


User provided reference genes

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