Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 1.7e-48 195.7 97 100.0
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 1.7e-48 195.7 97 100.0
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 3.8e-48 194.5 97 99.0
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 3.8e-48 194.5 97 99.0
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 3.8e-48 194.5 97 99.0
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 3.8e-48 194.5 97 99.0
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 3.8e-48 194.5 97 99.0
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 4.9e-48 194.1 97 97.9
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 4.9e-48 194.1 97 97.9
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 4.9e-48 194.1 97 97.9
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 4.9e-48 194.1 97 97.9
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 4.9e-48 194.1 97 97.9
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 8.4e-48 193.4 97 97.9
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 7.1e-47 190.3 97 96.9
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 1.2e-46 189.5 97 96.9
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 4.3e-44 181.0 95 92.6
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 7.3e-44 180.3 95 92.6
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 3.6e-43 177.9 95 91.6
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 8.1e-43 176.8 88 96.6
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 1.2e-41 172.9 95 87.4
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 1.2e-41 172.9 95 87.4
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 2.0e-41 172.2 95 86.3
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 86.3
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 86.3
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 86.3
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 86.3
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 86.3
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 86.3
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 85.3
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 86.3
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 85.3
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 1.3e-40 169.5 95 84.2
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 1.7e-40 169.1 152 63.2
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 1.7e-40 169.1 95 85.3
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 1.7e-40 169.1 95 85.3
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 1.7e-40 169.1 95 86.3
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 1.7e-40 169.1 95 85.3
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 1.7e-40 169.1 95 84.2
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 2.9e-40 168.3 95 83.2
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 2.9e-40 168.3 95 85.3
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 2.9e-40 168.3 95 84.2
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 2.9e-40 168.3 95 85.3
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 83.2
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 83.2
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 83.2
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 83.2
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 84.2
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 8.4e-40 166.8 95 83.2
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 8.4e-40 166.8 95 84.2
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 8.4e-40 166.8 95 82.1
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 8.4e-40 166.8 95 82.1
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 1.9e-39 165.6 95 84.2
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 2.4e-39 165.2 95 84.2
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 2.4e-39 165.2 95 84.2
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 2.4e-39 165.2 95 84.2
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 3.2e-39 164.9 95 83.2
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 4.2e-39 164.5 95 84.2
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 5.4e-39 164.1 95 81.1
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 5.4e-39 164.1 95 83.2
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 7.1e-39 163.7 95 83.2
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 7.1e-39 163.7 95 82.1
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 9.3e-39 163.3 95 81.1
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 9.3e-39 163.3 95 80.0
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 9.3e-39 163.3 95 81.1
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 1.6e-38 162.5 102 79.4
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 1.6e-38 162.5 95 83.2
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 2.1e-38 162.2 95 80.0
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.1e-38 162.2 95 80.0
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.1e-38 162.2 95 80.0
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.1e-38 162.2 95 80.0
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 2.1e-38 162.2 95 81.1
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 2.1e-38 162.2 95 81.1
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 2.7e-38 161.8 95 80.0
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 4.6e-38 161.0 96 79.2
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 6.0e-38 160.6 95 81.1
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 7.8e-38 160.2 95 81.1
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 7.8e-38 160.2 95 78.9
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 7.8e-38 160.2 95 81.1
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 7.8e-38 160.2 95 81.1
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.3e-37 159.5 95 78.9
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 1.3e-37 159.5 95 82.1
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 1.3e-37 159.5 95 80.0
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 1.7e-37 159.1 86 90.7
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 1.7e-37 159.1 95 81.1
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 1.7e-37 159.1 95 80.0
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 1.7e-37 159.1 95 82.1
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 80.0
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 5.1e-37 157.5 95 81.1
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 1.1e-36 156.4 95 77.9
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 1.5e-36 156.0 95 76.8
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 2.5e-36 155.2 94 78.7
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 3.3e-36 154.8 95 76.8
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 3.3e-36 154.8 95 75.8
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 7.3e-36 153.7 95 75.8
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 2.8e-35 151.8 94 79.8
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 2.8e-35 151.8 95 72.6
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 3.6e-35 151.4 95 73.7
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 4.8e-35 151.0 108 71.3
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 4.8e-35 151.0 84 84.5
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 1.1e-34 149.8 95 74.7
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 1.1e-34 149.8 95 72.6
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 3.1e-34 148.3 95 72.6
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 5.3e-34 147.5 95 74.7
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 4.5e-33 144.4 148 54.7
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 7.6e-33 143.7 136 58.1
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 3.2e-31 138.3 71 94.4
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.6e-30 136.0 96 72.9
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 5.1e-29 131.0 75 82.7
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 9.0e-26 120.2 95 63.2
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 2.0e-25 119.0 72 76.4
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 3.4e-25 118.2 72 77.8
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 4.5e-25 117.9 69 81.2
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 5.8e-25 117.5 74 75.7
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 5.8e-25 117.5 69 78.3
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 9.9e-25 116.7 72 75.0
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 1.7e-24 115.9 68 80.9
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 2.9e-24 115.2 69 78.3
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 3.8e-24 114.8 99 55.6
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 6.4e-24 114.0 68 77.9
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 6.4e-24 114.0 92 59.8
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 8.4e-24 113.6 69 75.4
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 3.2e-23 111.7 60 85.0
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 7.1e-23 110.5 69 75.4
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 2.1e-22 109.0 66 75.8
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 1.0e-21 106.7 94 56.4
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.3e-21 106.3 69 72.5
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 2.3e-21 105.5 62 79.0
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 4.0e-18 94.7 57 77.2
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 1.1e-15 86.7 93 46.2
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 2.7e-14 82.0 58 70.7
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.3e-13 79.7 53 71.7
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 2.6e-09 65.5 42 71.4
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 2.5e-07 58.9 33 84.8


User provided reference genes

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