Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 4.6e-93 344.7 197 100.0
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 7.3e-91 337.4 197 88.8
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.6e-90 336.3 197 88.3
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 6.2e-90 334.3 197 87.8
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 6.2e-90 334.3 197 87.8
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 6.8e-89 330.9 196 94.4
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 2.3e-84 315.8 195 82.1
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.1e-83 313.5 197 79.7
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.9e-83 312.8 195 82.6
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.7e-82 308.1 197 78.7
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.5e-80 303.1 206 75.2
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 5.2e-73 278.1 195 73.8
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 8.7e-68 260.8 172 77.3
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 7.6e-64 247.7 149 77.2
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 7.6e-64 247.7 152 77.0
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 9.9e-64 247.3 151 78.1
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 4.9e-63 245.0 151 76.2
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 8.4e-63 244.2 151 76.8
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.1e-62 243.8 153 76.5
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.9e-62 243.0 151 75.5
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.9e-62 243.0 152 74.3
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.4e-62 242.7 152 76.3
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 9.3e-62 240.7 152 75.7
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.2e-61 240.4 152 74.3
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.2e-61 240.4 170 71.2
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.1e-61 239.6 151 75.5
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 2.1e-61 239.6 152 75.0
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 3.5e-61 238.8 150 74.7
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 3.5e-61 238.8 159 72.3
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.0e-60 237.3 166 71.1
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.9e-60 235.3 173 68.2
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.9e-60 235.3 171 69.0
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.9e-60 235.3 156 74.4
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.1e-60 235.0 152 73.7
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 5.1e-60 235.0 151 73.5
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 8.7e-60 234.2 163 71.2
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 2.5e-59 232.6 177 66.1
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 7.3e-59 231.1 173 67.1
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 9.6e-59 230.7 120 91.7
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.6e-58 229.9 162 71.0
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.6e-58 229.9 151 74.2
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 4.8e-58 228.4 160 73.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 8.1e-58 227.6 151 69.5
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.1e-57 227.3 155 73.5
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.4e-57 226.9 159 70.4
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 5.3e-57 224.9 171 64.3
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 6.9e-57 224.6 151 70.2
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.5e-56 223.4 151 73.5
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.4e-56 222.2 197 59.4
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 3.4e-56 222.2 181 62.4
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 5.8e-56 221.5 160 68.1
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 7.6e-56 221.1 168 64.9
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 9.9e-56 220.7 149 75.2
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.7e-55 219.9 166 66.9
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.7e-55 219.9 151 72.2
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 4.9e-55 218.4 151 70.2
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 9.3e-54 214.2 169 65.1
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.6e-53 213.4 188 59.6
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 2.7e-53 212.6 173 63.6
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.3e-52 210.3 150 68.0
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 5.1e-52 208.4 172 62.8
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.5e-51 206.8 200 56.5
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 2.5e-51 206.1 150 67.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.3e-51 205.7 209 53.6
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 7.4e-51 204.5 151 62.3
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 7.4e-51 204.5 152 68.4
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.3e-50 203.8 150 66.7
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.6e-50 203.4 151 66.9
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 4.8e-50 201.8 149 63.8
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.8e-50 201.8 151 66.2
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.1e-49 200.7 157 62.4
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.1e-49 200.7 152 67.1
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 9.0e-49 197.6 155 61.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.5e-48 196.8 152 65.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.5e-48 196.8 153 65.4
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 4.5e-48 195.3 153 60.8
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.5e-48 195.3 173 57.2
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 7.6e-48 194.5 157 61.8
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 2.2e-47 193.0 152 61.8
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 2.9e-47 192.6 151 64.2
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.8e-47 192.2 148 60.1
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.4e-46 190.3 119 77.3
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.9e-46 189.9 119 74.8
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 3.2e-46 189.1 112 80.4
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 7.1e-46 188.0 124 75.0
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.6e-45 186.8 150 59.3
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 1.6e-45 186.8 150 62.0
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 1.6e-45 186.8 112 80.4
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 3.5e-45 185.7 112 77.7
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.5e-45 185.7 108 82.4
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 4.6e-45 185.3 152 57.9
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.6e-45 185.3 163 57.7
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 6.0e-45 184.9 152 63.2
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.0e-44 184.1 151 58.3
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.9e-44 182.2 149 57.0
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 3.9e-44 182.2 109 79.8
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.1e-43 180.6 151 60.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.5e-43 180.3 113 76.1
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.5e-43 180.3 162 57.4
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.7e-43 178.3 163 56.4
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 5.7e-43 178.3 146 61.0
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 7.4e-43 177.9 120 74.2
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.6e-42 176.8 158 59.5
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.6e-42 176.8 150 59.3
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 2.1e-42 176.4 112 75.0
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.8e-42 176.0 113 74.3
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 4.8e-42 175.3 112 75.0
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 6.2e-42 174.9 124 71.8
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.1e-41 174.1 119 69.7
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 4.0e-41 172.2 112 76.8
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 4.0e-41 172.2 116 71.6
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.2e-40 170.6 112 72.3
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.0e-40 169.9 146 59.6
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 7.6e-40 167.9 148 58.1
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.3e-39 167.2 144 58.3
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.9e-38 163.3 150 55.3
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 7.1e-38 161.4 116 62.9
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 3.5e-37 159.1 152 56.6
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 3.5e-37 159.1 129 61.2
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 6.1e-37 158.3 124 60.5
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 7.9e-37 157.9 112 68.8
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.3e-36 157.1 146 55.5
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.0e-36 156.0 152 55.9
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 7.4e-35 151.4 129 59.7
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.5e-32 143.7 150 56.0
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.5e-32 143.7 130 60.0
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 5.0e-31 138.7 111 58.6
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.1e-30 137.5 96 65.6
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.2e-29 134.0 77 80.5
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 2.7e-29 132.9 151 51.7
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.6e-29 132.5 132 53.8
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 4.1e-25 119.0 104 60.6
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.9e-24 115.2 69 76.8
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 5.9e-24 115.2 122 50.8
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 2.2e-23 113.2 70 77.1
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 8.5e-23 111.3 90 64.4
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.2e-21 107.5 151 41.7
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.1e-21 106.7 70 72.9
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.1e-21 106.7 77 57.1
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.0e-20 102.8 71 69.0
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 3.3e-19 99.4 147 42.9
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 4.4e-19 99.0 153 38.6
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.4e-17 93.2 81 56.8
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.4e-17 93.2 123 47.2
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 9.1e-17 91.3 118 47.5
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.0e-15 87.8 55 74.5
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 6.7e-12 75.1 47 72.3
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 8.8e-12 74.7 69 56.5
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.2e-10 70.1 36 86.1
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.7e-10 69.3 35 85.7
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.4e-09 67.4 36 83.3
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 4.1e-09 65.9 44 61.4
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 3.5e-08 62.8 37 70.3
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 3.5e-08 62.8 37 73.0
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.0e-07 61.2 35 77.1
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 1.0e-07 61.2 35 71.4
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.0e-07 61.2 86 44.2
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 1.3e-07 60.8 33 78.8
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.7e-07 60.5 36 72.2
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 3.8e-07 59.3 37 73.0
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.8e-07 59.3 47 46.8
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 3.8e-07 59.3 33 81.8
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-06 57.8 32 78.1
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 1.5e-06 57.4 35 71.4
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 1.9e-06 57.0 95 30.5
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 5.5e-06 55.5 39 56.4
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 9.4e-06 54.7 36 61.1


User provided reference genes

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