Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-128 462.6 228 100.0
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.3e-128 462.2 228 99.6
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 2.6e-124 448.7 228 96.5
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.2e-122 441.8 233 94.0
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.8e-115 418.3 228 89.9
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 6.0e-113 411.0 228 88.2
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 7.8e-113 410.6 228 87.7
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.3e-112 409.8 223 88.8
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.5e-111 406.4 228 87.3
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.3e-110 403.3 228 86.4
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-109 400.2 228 86.4
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 5.4e-106 387.9 196 96.4
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.7e-104 382.9 226 83.6
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 8.7e-104 380.6 228 83.8
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 8.7e-104 380.6 228 83.8
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.1e-102 375.9 227 83.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.5e-100 368.2 228 80.3
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.5e-95 352.4 255 71.0
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.8e-92 341.3 228 76.8
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.8e-86 322.4 228 75.4
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.8e-86 321.6 228 71.1
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.3e-78 297.0 222 68.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.6e-78 296.6 224 66.1
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.8e-78 295.8 223 65.5
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.8e-78 295.0 226 65.5
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.3e-78 294.7 225 65.8
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.8e-77 293.1 226 61.9
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.8e-77 293.1 224 64.7
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.8e-77 293.1 227 63.0
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 4.1e-77 292.0 225 64.4
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.2e-76 290.4 223 63.7
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.2e-76 290.4 237 60.8
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.5e-76 290.0 217 66.4
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 3.4e-76 288.9 225 60.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 4.5e-76 288.5 225 64.4
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 4.5e-76 288.5 226 63.3
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 5.9e-76 288.1 219 65.3
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 7.7e-76 287.7 226 61.5
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 7.7e-76 287.7 230 63.5
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.2e-75 286.2 225 63.1
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 2.2e-75 286.2 225 61.8
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.9e-75 285.8 231 62.3
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.9e-75 285.8 218 61.9
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.9e-75 285.8 257 58.8
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 2.9e-75 285.8 234 60.3
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.9e-75 285.8 224 63.4
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.8e-75 285.4 231 61.5
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.8e-75 285.4 225 63.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 5.0e-75 285.0 225 63.6
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.5e-75 284.6 226 64.2
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.4e-74 283.5 231 63.2
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.4e-74 283.5 225 64.0
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.2e-74 282.3 231 63.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 3.2e-74 282.3 227 60.8
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 5.5e-74 281.6 226 63.3
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.5e-74 281.6 227 63.4
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 7.2e-74 281.2 226 60.2
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 9.4e-74 280.8 227 62.6
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 9.4e-74 280.8 230 62.6
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.6e-73 280.0 217 63.6
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.6e-73 280.0 241 59.8
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.1e-73 279.6 229 61.1
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 2.7e-73 279.3 223 60.1
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 4.6e-73 278.5 230 59.1
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.3e-72 276.2 223 63.2
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 3.0e-72 275.8 224 62.5
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 3.0e-72 275.8 229 61.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.9e-72 275.4 226 61.9
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 8.8e-72 274.2 225 59.1
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.5e-71 273.5 232 61.2
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.0e-71 273.1 229 59.8
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.3e-71 272.3 220 61.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.3e-71 271.9 227 60.8
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.7e-71 270.8 225 60.4
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 1.3e-70 270.4 224 61.2
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.3e-70 270.4 227 60.4
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.3e-70 270.4 219 64.4
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.7e-70 270.0 226 60.2
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.7e-70 270.0 244 57.8
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.7e-70 270.0 226 59.7
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.2e-70 269.6 220 60.0
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.2e-70 269.6 226 61.1
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 4.8e-70 268.5 236 59.3
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 4.8e-70 268.5 168 74.4
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 4.8e-70 268.5 225 59.6
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 4.8e-70 268.5 230 59.1
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 6.3e-70 268.1 225 62.2
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.1e-69 267.3 226 58.8
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.1e-69 267.3 225 61.3
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.8e-69 266.5 237 59.5
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.1e-69 265.4 227 58.6
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 4.1e-69 265.4 225 60.0
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.2e-68 263.8 219 60.3
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.5e-68 263.5 227 58.1
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.6e-68 262.7 222 58.1
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 7.7e-68 261.2 223 60.5
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.7e-68 261.2 230 56.1
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 7.7e-68 261.2 225 58.7
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.3e-67 260.4 250 54.8
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.7e-67 260.0 227 57.7
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 2.2e-67 259.6 224 56.7
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.9e-67 259.2 225 56.4
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.5e-67 258.1 246 54.9
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.4e-66 256.9 225 58.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.2e-65 253.8 228 57.9
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 2.7e-65 252.7 236 56.4
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 7.9e-65 251.1 159 73.6
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 7.9e-65 251.1 229 57.6
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 7.9e-65 251.1 210 62.4
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 7.9e-65 251.1 223 57.4
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 7.9e-65 251.1 233 56.2
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.5e-63 246.9 225 58.2
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-63 246.1 223 52.9
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 4.4e-63 245.4 223 53.8
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.4e-63 245.4 223 53.8
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.4e-63 245.4 223 53.8
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.8e-62 242.7 267 48.7
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.4e-61 240.4 161 70.2
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.8e-61 240.0 274 49.6
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 2.4e-61 239.6 237 53.6
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.1e-61 239.2 223 52.5
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 4.1e-61 238.8 254 48.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.1e-61 238.8 219 55.3
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 5.3e-61 238.4 226 54.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 7.0e-61 238.0 240 55.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 7.0e-61 238.0 224 54.0
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.5e-60 236.9 222 56.3
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 9.4e-58 227.6 220 55.0
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 9.4e-58 227.6 226 53.5
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.2e-57 227.3 244 50.4
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.7e-57 226.1 198 57.1
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.3e-56 223.0 133 84.2
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 8.2e-54 214.5 138 73.9
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.1e-53 212.6 141 66.7
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.1e-53 212.6 276 44.6
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 2.1e-49 199.9 130 70.8
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.0e-48 196.1 239 48.5
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.5e-47 193.7 140 66.4
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.4e-47 192.6 178 53.9
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.8e-46 189.5 130 70.8
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 4.1e-45 185.7 135 63.7
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.6e-44 183.7 134 64.2
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 2.7e-44 183.0 160 55.0
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-43 180.3 133 64.7
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 4.0e-40 169.1 122 67.2
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 8.3e-38 161.4 134 56.7
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 5.2e-32 142.1 90 71.1
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-31 141.0 229 38.9
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.5e-31 140.6 129 58.9
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 6.3e-30 135.2 91 69.2
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 9.8e-23 111.3 71 74.6
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.9e-21 107.1 115 48.7
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 4.1e-21 105.9 79 68.4
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 4.1e-21 105.9 123 40.7
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.2e-20 104.4 227 30.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.7e-19 100.5 101 53.5
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.8e-16 90.5 74 64.9
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.8e-16 90.5 102 43.1
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 3.1e-16 89.7 172 33.1
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 4.4e-15 85.9 124 35.5
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 5.8e-15 85.5 117 37.6
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.9e-13 80.5 94 46.8
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.9e-13 80.5 94 44.7
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.4e-13 80.1 97 42.3
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 3.2e-13 79.7 86 47.7
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 5.4e-13 79.0 73 57.5
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 3.9e-11 72.8 56 66.1
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 5.2e-08 62.4 48 66.7


User provided reference genes

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