Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1215.7 644 100.0
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1195.3 644 96.4
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1146.3 647 94.1
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1144.4 649 93.7
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1133.6 644 92.1
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1116.7 647 92.6
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 0.0e+00 1077.4 646 88.1
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1077.4 644 89.4
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 4.4e-312 1073.9 645 89.5
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 4.4e-312 1073.9 647 89.0
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 4.4e-312 1073.5 644 86.6
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 8.8e-312 1073.2 646 89.3
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 1.3e-311 1072.4 644 89.1
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 3.1e-311 1071.2 646 88.5
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 3.3e-310 1067.8 650 86.8
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 9.7e-310 1066.2 648 88.0
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 9.1e-308 1059.7 653 85.8
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 2.5e-305 1051.6 646 87.8
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 2.4e-300 1035.0 645 86.5
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 6.3e-293 1010.4 646 81.6
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.5e-286 989.2 647 80.8
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.6e-257 891.0 652 72.4
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.1e-255 886.7 651 71.1
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.1e-255 886.7 651 71.1
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.3e-255 885.6 652 72.2
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 5.2e-255 884.4 653 70.1
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.2e-254 883.2 650 71.4
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.2e-254 883.2 657 71.4
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 2.6e-254 882.1 655 71.6
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 3.4e-254 881.7 629 74.9
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 4.1e-252 874.8 652 70.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 7.1e-252 874.0 654 70.2
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.2e-251 873.2 651 72.0
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 6.0e-251 870.9 649 69.3
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 7.8e-251 870.5 651 72.2
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.0e-250 870.2 657 70.2
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.7e-250 869.4 659 71.2
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 3.0e-250 868.6 652 69.6
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 4.3e-249 864.8 652 70.9
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 5.6e-249 864.4 655 69.0
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 7.3e-249 864.0 656 69.4
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.6e-248 862.8 658 70.2
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 3.6e-248 861.7 657 69.3
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 6.8e-247 857.4 650 69.8
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.2e-246 856.7 650 69.4
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.2e-246 856.7 650 70.0
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.2e-246 856.7 632 72.5
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 2.0e-246 855.9 657 68.9
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.7e-245 852.8 648 69.8
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 6.4e-245 850.9 654 70.8
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 8.4e-245 850.5 650 69.8
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 8.4e-245 850.5 657 69.1
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.1e-244 850.1 650 69.7
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.4e-244 849.7 649 69.6
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.4e-244 849.0 650 69.5
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 2.4e-244 849.0 654 69.3
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 2.1e-243 845.9 661 69.6
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 3.9e-242 841.6 644 69.7
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 5.6e-241 837.8 653 67.8
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.6e-240 836.3 656 67.7
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 4.7e-240 834.7 635 69.9
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.1e-239 832.0 654 66.8
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 3.1e-239 832.0 659 66.8
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.0e-238 829.3 646 70.1
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 2.0e-238 829.3 641 69.6
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 3.8e-237 825.1 653 66.8
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 8.4e-237 823.9 650 67.8
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 1.1e-236 823.5 649 68.0
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 1.4e-236 823.2 643 68.3
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.2e-235 820.1 655 67.0
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 1.3e-234 816.6 653 67.4
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.7e-234 816.2 644 67.5
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 6.6e-234 814.3 580 72.4
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 2.5e-233 812.4 652 66.1
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 7.3e-233 810.8 654 67.1
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.3e-232 810.1 660 67.0
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 2.1e-232 809.3 656 66.8
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.2e-230 803.5 654 65.4
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 2.6e-230 802.4 657 65.1
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 7.6e-230 800.8 654 65.1
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 9.9e-230 800.4 650 66.5
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.7e-229 799.7 647 65.1
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 3.8e-229 798.5 654 66.1
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 3.8e-229 798.5 656 65.9
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 3.8e-229 798.5 654 65.0
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 6.4e-229 797.7 651 67.7
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 8.4e-229 797.3 662 64.8
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.9e-228 796.2 657 65.4
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 4.2e-228 795.0 653 65.2
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 9.3e-228 793.9 658 66.1
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.0e-226 790.4 577 72.1
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.8e-226 789.6 663 64.7
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 6.7e-226 787.7 650 63.8
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 5.6e-225 784.6 657 64.4
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 3.7e-224 781.9 653 62.6
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 4.8e-224 781.6 644 66.1
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 4.0e-223 778.5 626 69.8
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 6.9e-223 777.7 636 66.8
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.6e-222 775.8 650 65.5
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.5e-222 775.0 647 65.5
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 8.4e-221 770.8 647 64.8
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.2e-219 766.9 657 62.6
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.3e-213 746.9 650 61.8
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.5e-209 732.6 650 60.0
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.6e-208 729.9 664 61.7
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 1.8e-207 726.5 643 63.8
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.7e-205 719.9 655 60.6
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.2e-205 719.5 655 60.5
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 4.2e-196 688.7 652 57.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 9.4e-196 687.6 651 57.9
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.7e-195 686.0 653 58.3
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 1.4e-191 673.7 624 64.7
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.2e-189 666.4 657 56.0
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.6e-185 652.9 633 58.1
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 2.2e-181 639.8 651 56.4
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 7.2e-180 634.8 549 63.6
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.4e-178 630.6 653 53.8
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.0e-177 626.7 643 56.0
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.5e-174 615.9 646 56.5
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 8.0e-163 578.2 657 50.8
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.4e-151 540.8 555 56.0
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 3.7e-144 516.2 677 46.8
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 4.1e-135 486.1 677 43.0
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 7.6e-121 438.7 686 41.3
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 8.1e-115 418.7 363 62.5
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 4.2e-103 379.8 335 65.4
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 1.2e-89 335.1 243 67.9
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 1.1e-87 328.6 382 47.6
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 2.0e-60 238.0 345 46.7
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 7.5e-44 183.0 563 29.3
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 2.4e-42 177.9 113 77.9
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 2.4e-34 151.4 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.4e-26 125.6 113 64.6
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 2.1e-14 85.1 90 55.6
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 3.5e-09 67.8 96 38.5
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.3e-08 65.9 44 70.5


User provided reference genes

Program Settings