Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p14800 Brassica napus HOM05D010683 ORTHO05D008293 4.5e-84 314.7 176 100.0
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 9.4e-82 307.0 176 96.6
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 9.4e-82 307.0 176 96.6
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 9.4e-82 307.0 176 96.6
BcaB08g36093 Brassica carinata HOM05D010683 ORTHO05D008293 2.1e-65 252.7 183 82.0
A02p08580 Brassica napus HOM05D010683 ORTHO05D008293 3.4e-63 245.4 177 81.9
BraA02t05927Z Brassica rapa HOM05D010683 ORTHO05D008293 3.4e-63 245.4 177 81.9
Thhalv10014550m.g Eutrema salsugineum HOM05D010683 ORTHO05D008293 6.8e-56 221.1 182 75.8
BcaC03g14162 Brassica carinata HOM05D010683 ORTHO05D008293 3.4e-55 218.8 177 75.7
Sp6g19060 Schrenkiella parvula HOM05D010683 ORTHO05D008293 1.7e-54 216.5 179 74.9
C02p14330 Brassica napus HOM05D010683 ORTHO05D008293 6.4e-54 214.5 177 74.6
BolC2t07559H Brassica oleracea HOM05D010683 ORTHO05D008293 6.4e-54 214.5 177 74.6
BcaB05g22338 Brassica carinata HOM05D010683 ORTHO05D008293 4.3e-50 201.8 177 71.8
AT5G57340 Arabidopsis thaliana HOM05D010683 ORTHO05D008293 7.3e-50 201.1 185 70.8
CARHR271130 Cardamine hirsuta HOM05D010683 ORTHO05D008293 4.4e-47 191.8 182 70.3
Carub.0008s1785 Capsella rubella HOM05D010683 ORTHO05D008293 2.9e-46 189.1 187 68.4
AL8G33310 Arabidopsis lyrata HOM05D010683 ORTHO05D008293 4.9e-46 188.3 184 68.5
Aa31LG3G13210 Aethionema arabicum HOM05D010683 ORTHO05D008293 2.0e-31 139.8 179 57.5
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 1.2e-20 104.0 218 37.6
COL.COLO4_35626 Corchorus olitorius HOM05D007665 ORTHO05D008293 5.1e-19 98.6 243 36.2
Gohir.D08G093300 Gossypium hirsutum HOM05D007665 ORTHO05D008293 5.1e-19 98.6 238 36.6
THA.LOC104811782 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 1.5e-18 97.1 222 41.0
Manes.06G022200 Manihot esculenta HOM05D007665 ORTHO05D008293 9.6e-18 94.4 229 34.5
Atru.chr7.835 Acer truncatum HOM05D007665 ORTHO05D008293 6.2e-17 91.7 223 39.0
Medtr2g036740 Medicago truncatula HOM05D007665 ORTHO05D008293 8.1e-17 91.3 201 34.3
Cpa.g.c26900 Carica papaya HOM05D007665 ORTHO05D008293 1.1e-16 90.9 258 34.1
Duzib150G0483 Durio zibethinus HOM05D007665 ORTHO05D008293 1.8e-16 90.1 247 36.0
Ciclev10009102m.g Citrus clementina HOM05D007665 ORTHO05D008293 5.3e-16 88.6 250 34.4
TPR.G9242 Trifolium pratense HOM05D007665 ORTHO05D008293 1.5e-15 87.0 216 32.9
Gorai.004G098900 Gossypium raimondii HOM05D007665 ORTHO05D008293 7.6e-15 84.7 233 33.9
THA.LOC104813513 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 9.9e-15 84.3 211 40.3
CiPaw.08G034700 Carya illinoinensis HOM05D007665 ORTHO05D008293 1.3e-14 84.0 238 32.8
Sabra06G0127300 Salix brachista HOM05D007665 ORTHO05D008293 4.9e-14 82.0 246 34.6
TWI34G1272 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 4.9e-14 82.0 231 34.6
TWI32G1073 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 8.4e-14 81.3 229 35.4
Psat1g146200 Pisum sativum HOM05D007665 ORTHO05D008293 1.9e-13 80.1 199 33.7
Phvul.003G143500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 2.4e-13 79.7 236 30.5
Manes.14G158020 Manihot esculenta HOM05D007665 ORTHO05D008293 3.2e-13 79.3 237 33.8
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 4.2e-13 79.0 243 33.3
Glyma.17G061500 Glycine max HOM05D007665 ORTHO05D008293 7.1e-13 78.2 221 32.1
Gohir.A08G083600 Gossypium hirsutum HOM05D007665 ORTHO05D008293 7.1e-13 78.2 233 33.0
MELO3C017449.2 Cucumis melo HOM05D007665 ORTHO05D008293 1.6e-12 77.0 238 32.8
CsaV3_1G031740 Cucumis sativus L. HOM05D007665 ORTHO05D008293 3.5e-12 75.9 238 32.4
CANSAT11G1651 Cannabis sativa HOM05D007665 ORTHO05D008293 6.0e-12 75.1 233 32.2
Glyma.13G098200 Glycine max HOM05D007665 ORTHO05D008293 7.9e-12 74.7 219 33.3
Sed0009111 Sechium edule HOM05D007665 ORTHO05D008293 7.9e-12 74.7 201 32.8
CiPaw.07G194500 Carya illinoinensis HOM05D007665 ORTHO05D008293 1.3e-11 73.9 243 33.7
FAN17G2593 Fragaria x ananassa HOM05D007665 ORTHO05D008293 1.3e-11 73.9 263 29.3
Lj6g0002099 Lotus japonicus HOM05D007665 ORTHO05D008293 1.3e-11 73.9 237 31.2
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 1.8e-11 73.6 220 33.2
FvH4_4g07760 Fragaria vesca HOM05D007665 ORTHO05D008293 1.8e-11 73.6 263 28.9
FAN12G1950 Fragaria x ananassa HOM05D007665 ORTHO05D008293 1.8e-11 73.6 263 28.9
ClCG06G013480 Citrullus lanatus HOM05D007665 ORTHO05D008293 3.0e-11 72.8 244 31.1
PGR142G3274 Punica granatum HOM05D007665 ORTHO05D008293 3.0e-11 72.8 195 32.8
VMungo1215G3214 Vigna mungo HOM05D007665 ORTHO05D008293 3.0e-11 72.8 239 31.4
arahy.Tifrunner.gnm1.ann1.38WMVK Arachis hypogaea HOM05D007665 ORTHO05D008293 3.9e-11 72.4 214 33.6
arahy.Tifrunner.gnm1.ann1.HIJU8F Arachis hypogaea HOM05D007665 ORTHO05D008293 3.9e-11 72.4 214 33.6
FAN07G1410 Fragaria x ananassa HOM05D007665 ORTHO05D008293 6.7e-11 71.6 263 28.1
Phvul.009G238500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 6.7e-11 71.6 248 31.0
Potri.006G165500 Populus trichocarpa HOM05D007665 ORTHO05D008293 6.7e-11 71.6 232 32.8
Sed0009659 Sechium edule HOM05D007665 ORTHO05D008293 3.3e-10 69.3 241 29.5
Gohir.A05G003700 Gossypium hirsutum HOM05D007665 ORTHO05D008293 4.3e-10 68.9 198 34.8
Cfa013407 Carpinus fangiana HOM05D007665 ORTHO05D008293 5.6e-10 68.6 233 32.6
Gorai.009G003800 Gossypium raimondii HOM05D007665 ORTHO05D008293 5.6e-10 68.6 192 33.9
RcHm_v2.0_Chr4g0400841 Rosa chinensis HOM05D007665 ORTHO05D008293 7.4e-10 68.2 263 27.8
VMungo1309G2535 Vigna mungo HOM05D007665 ORTHO05D008293 9.6e-10 67.8 253 29.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 2.1e-09 66.6 182 31.3
Glyma.09G056900 Glycine max HOM05D007665 ORTHO05D008293 2.8e-09 66.2 249 28.9
Glyma.15G163200 Glycine max HOM05D007665 ORTHO05D008293 2.8e-09 66.2 249 31.3
Gohir.D05G004100 Gossypium hirsutum HOM05D007665 ORTHO05D008293 4.8e-09 65.5 187 33.7
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 6.2e-09 65.1 260 28.8
FAN22G0501 Fragaria x ananassa HOM05D007665 ORTHO05D008293 8.1e-09 64.7 263 27.4
MD13G1247000 Malus domestica HOM05D007665 ORTHO05D008293 1.1e-08 64.3 238 27.3
MD16G1253900 Malus domestica HOM05D007665 ORTHO05D008293 1.4e-08 63.9 240 27.9
MSTRG.6233 Avicennia marina HOM05D007665 ORTHO05D008293 1.8e-08 63.5 209 30.1
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 5.3e-08 62.0 175 33.1
Lj4g0023476 Lotus japonicus HOM05D007665 ORTHO05D008293 9.0e-08 61.2 229 32.3
TPR.G5363 Trifolium pratense HOM05D007665 ORTHO05D008293 2.0e-07 60.1 152 36.8
arahy.Tifrunner.gnm1.ann1.6P3KM7 Arachis hypogaea HOM05D007665 ORTHO05D008293 3.4e-07 59.3 250 30.4
arahy.Tifrunner.gnm1.ann1.D7NBKG Arachis hypogaea HOM05D007665 ORTHO05D008293 1.3e-06 57.4 249 29.7
Prupe.1G081700 Prunus persica HOM05D007665 ORTHO05D008293 1.3e-06 57.4 240 26.7
Ca_21241_v3 Cicer arietinum L. HOM05D007665 ORTHO05D008293 1.7e-06 57.0 202 28.7
Rhsim01G0002100 Rhododendron simsii HOM05D007665 ORTHO05D008293 2.2e-06 56.6 225 26.7
Sabra18G0077500 Salix brachista HOM05D007665 ORTHO05D008293 2.2e-06 56.6 253 28.5
GSVIVG01029234001 Vitis vinifera HOM05D007665 ORTHO05D008293 2.2e-06 56.6 194 30.4
QL11p005089 Quercus lobata HOM05D007665 ORTHO05D008293 2.9e-06 56.2 46 60.9
Solyc07g017870.2 Solanum lycopersicum HOM05D023392 ORTHO05D008293 4.9e-06 55.5 233 27.9
Lalb_Chr18g0052461 Lupinus albus HOM05D007665 ORTHO05D008293 6.4e-06 55.1 45 62.2


User provided reference genes

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