Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.4e-37 159.1 78 100.0
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.4e-21 104.0 56 87.5
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 9.1e-21 103.2 53 90.6
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 9.1e-21 103.2 53 90.6
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 9.1e-21 103.2 53 90.6
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 9.1e-21 103.2 53 90.6
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 9.1e-21 103.2 53 90.6
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 9.1e-21 103.2 53 90.6
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.2e-20 102.8 52 94.2
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.2e-20 102.8 52 94.2
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 1.2e-20 102.8 56 87.5
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 2.0e-20 102.1 53 88.7
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.0e-20 102.1 53 88.7
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 2.0e-20 102.1 53 88.7
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 2.7e-20 101.7 56 85.7
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 3.5e-20 101.3 53 88.7
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.9e-20 100.5 53 88.7
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 5.9e-20 100.5 53 86.8
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 7.7e-20 100.1 53 88.7
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 7.7e-20 100.1 53 86.8
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.0e-19 99.8 53 84.9
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 1.3e-19 99.4 56 82.1
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 2.3e-19 98.6 53 86.8
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.3e-19 98.6 53 83.0
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 2.3e-19 98.6 53 84.9
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 5.0e-19 97.4 53 84.9
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 5.0e-19 97.4 53 83.0
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.1e-18 96.3 53 81.1
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.1e-18 96.3 53 83.0
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.1e-18 96.3 53 83.0
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.5e-18 95.9 53 81.1
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 3.3e-18 94.7 53 81.1
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 3.3e-18 94.7 53 81.1
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 3.3e-18 94.7 53 81.1
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 3.3e-18 94.7 53 81.1
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 3.3e-18 94.7 53 81.1
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 4.2e-18 94.4 53 81.1
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.2e-18 94.4 53 81.1
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 4.2e-18 94.4 53 81.1
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 4.2e-18 94.4 53 77.4
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 9.5e-18 93.2 53 81.1
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.1e-17 92.0 53 77.4
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 2.1e-17 92.0 53 81.1
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.1e-17 92.0 53 79.2
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 2.1e-17 92.0 56 75.0
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 2.1e-17 92.0 53 77.4
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.8e-17 91.7 54 77.8
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 2.8e-17 91.7 56 73.2
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 2.8e-17 91.7 53 77.4
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.6e-17 91.3 54 77.8
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 3.6e-17 91.3 53 77.4
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 3.6e-17 91.3 53 75.5
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 3.6e-17 91.3 53 79.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 4.7e-17 90.9 54 75.9
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 4.7e-17 90.9 53 75.5
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 4.7e-17 90.9 53 75.5
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 4.7e-17 90.9 53 77.4
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 4.7e-17 90.9 53 75.5
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 4.7e-17 90.9 53 79.2
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 6.1e-17 90.5 53 81.1
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 8.0e-17 90.1 53 79.2
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 8.0e-17 90.1 53 73.6
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.0e-16 89.7 53 77.4
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-16 89.4 53 77.4
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-16 89.4 53 77.4
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.4e-16 89.4 53 79.2
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.4e-16 89.4 53 73.6
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.8e-16 89.0 53 73.6
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 2.3e-16 88.6 54 75.9
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 3.0e-16 88.2 53 75.5
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 4.0e-16 87.8 79 59.5
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 8.9e-16 86.7 60 71.7
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.2e-15 86.3 53 75.5
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.2e-15 86.3 53 75.5
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.5e-15 85.9 53 75.5
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.5e-15 85.9 53 77.4
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.0e-15 85.5 53 77.4
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.0e-15 85.5 53 77.4
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 2.6e-15 85.1 53 77.4
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 3.4e-15 84.7 53 75.5
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 4.4e-15 84.3 53 73.6
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 5.7e-15 84.0 53 77.4
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 9.8e-15 83.2 53 71.7
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.3e-14 82.8 53 71.7
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.3e-14 82.8 53 73.6
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.3e-14 82.8 53 73.6
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.7e-14 82.4 53 73.6
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 2.2e-14 82.0 53 71.7
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 2.2e-14 82.0 53 73.6
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.9e-14 81.6 52 71.2
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 3.7e-14 81.3 53 73.6
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 4.9e-14 80.9 53 73.6
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 4.9e-14 80.9 53 73.6
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 4.9e-14 80.9 53 73.6
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 4.9e-14 80.9 53 73.6
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 6.3e-14 80.5 53 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.1e-13 79.7 53 69.8
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.1e-13 79.7 53 73.6
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.1e-13 79.7 53 73.6
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.4e-13 78.6 52 69.2
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 3.2e-13 78.2 67 59.7
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 4.1e-13 77.8 53 71.7
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 4.1e-13 77.8 53 71.7
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 5.4e-13 77.4 53 71.7
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 5.4e-13 77.4 53 71.7
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 9.2e-13 76.6 53 69.8
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 9.2e-13 76.6 53 71.7
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 1.2e-12 76.3 53 69.8
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.6e-12 75.9 53 67.9
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.6e-12 75.9 53 67.9
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.6e-12 75.9 51 66.7
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 2.0e-12 75.5 53 69.8
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 2.0e-12 75.5 53 69.8
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 2.7e-12 75.1 53 67.9
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 4.6e-12 74.3 51 64.7
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 7.8e-12 73.6 53 69.8
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 7.8e-12 73.6 62 62.9
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.0e-11 73.2 53 67.9
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 9.5e-10 66.6 45 64.4


User provided reference genes

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