Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 0.0e+00 1102.8 965 100.0
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 1.3e-305 1053.1 965 97.2
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.2e-268 930.2 970 87.6
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 7.5e-266 921.0 970 87.1
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 7.5e-266 921.0 970 87.1
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 4.9e-249 865.1 973 88.3
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 1.3e-217 760.8 981 80.8
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 2.1e-215 753.4 981 80.8
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 1.5e-210 737.3 981 78.5
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 4.5e-210 735.7 979 78.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 6.1e-207 725.3 981 77.5
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 7.4e-197 691.8 981 77.1
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 2.2e-172 610.5 1053 69.2
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 3.4e-93 347.4 751 50.9
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 1.2e-90 339.0 733 50.9
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 3.0e-89 334.3 1032 57.5
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 3.0e-89 334.3 1064 55.3
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 3.0e-89 334.3 1064 55.3
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 6.7e-89 333.2 1028 57.7
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 3.3e-88 330.9 754 49.6
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 2.8e-87 327.8 750 52.3
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 3.7e-87 327.4 1060 54.7
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.4e-86 325.5 1061 54.7
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.6e-85 322.0 774 49.2
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.3e-84 318.9 753 50.3
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 1.7e-84 318.5 987 56.2
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 6.5e-84 316.6 1044 56.2
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 1.9e-83 315.1 1068 55.3
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 1.9e-83 315.1 756 50.8
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 4.0e-81 307.4 1052 49.4
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 2.2e-79 301.6 754 48.0
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 6.3e-79 300.1 747 47.3
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 8.2e-79 299.7 743 43.2
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.4e-78 298.9 1062 53.9
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 7.0e-78 296.6 759 47.4
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 7.7e-77 293.1 743 42.9
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 1.3e-76 292.4 622 54.5
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 8.5e-76 289.7 746 51.6
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 4.2e-75 287.3 757 48.5
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 6.1e-74 283.5 749 47.1
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 6.1e-74 283.5 1073 53.8
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 3.7e-71 274.2 732 46.2
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 8.3e-71 273.1 747 49.4
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 1.8e-70 271.9 751 45.7
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 7.0e-70 270.0 758 46.2
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 2.7e-69 268.1 757 46.8
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 7.7e-69 266.5 765 46.8
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 7.7e-69 266.5 760 44.6
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 3.8e-68 264.2 633 58.0
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 3.8e-68 264.2 751 45.8
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 5.0e-68 263.8 877 58.2
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 8.5e-68 263.1 681 52.1
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 1.6e-66 258.8 730 45.9
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 2.1e-66 258.5 760 47.5
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 6.1e-66 256.9 634 51.3
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 4.0e-65 254.2 754 45.9
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 5.2e-65 253.8 666 59.2
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 1.5e-64 252.3 591 54.7
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 5.7e-64 250.4 734 47.5
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 1.1e-62 246.1 754 45.0
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 1.8e-62 245.4 665 52.9
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 2.0e-61 241.9 751 48.6
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 7.3e-59 233.4 877 55.2
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.6e-56 224.9 764 42.8
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 5.7e-56 223.8 708 45.2
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 2.2e-55 221.9 756 39.8
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 3.7e-55 221.1 663 45.6
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 4.3e-51 207.6 761 42.2
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 4.7e-50 204.1 682 45.0
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 1.0e-49 203.0 527 55.4
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 2.2e-47 195.3 845 58.9
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 3.2e-46 191.4 754 43.5
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 2.0e-45 188.7 588 45.1
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 4.3e-43 181.0 582 48.8
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 4.3e-43 181.0 648 53.1
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.8e-42 178.3 678 43.4
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 3.1e-41 174.9 654 50.5
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 1.7e-36 159.1 755 42.5
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.5e-35 155.2 680 40.1
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 3.3e-35 154.8 680 42.4
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 2.1e-34 152.1 538 46.1
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 1.2e-32 146.4 200 45.5
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 9.9e-32 143.3 625 46.6
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 2.2e-31 142.1 426 44.6
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 3.7e-31 141.4 288 33.0
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 5.4e-30 137.5 726 41.5
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 1.1e-27 129.8 228 40.8
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 9.9e-24 116.7 289 28.4
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 2.3e-20 105.5 633 47.7
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 4.3e-19 101.3 125 45.6
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 2.4e-17 95.5 238 31.1
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 9.9e-16 90.1 231 27.3
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.9e-14 85.9 240 30.4
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.1e-13 82.4 211 27.5
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 1.8e-12 79.3 396 54.3
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 1.8e-12 79.3 383 62.9
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 8.7e-12 77.0 148 35.1
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.3e-10 73.2 131 37.4
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 2.1e-10 72.4 381 63.3
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.4e-09 69.7 95 35.8
TAR376G0418 Trochodendron aralioides HOM05D002825 ORTHO05D003824 2.4e-09 68.9 95 38.9
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.5e-08 66.2 92 38.0
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.5e-08 66.2 150 30.0
Sc13g0007300 Simmondsia chinensis HOM05D006842 ORTHO05D008908 5.8e-08 64.3 89 34.8
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 7.6e-08 63.9 97 34.0
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 2.9e-07 62.0 154 32.5
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 3.8e-07 61.6 97 32.0
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 3.8e-07 61.6 97 32.0
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 4.9e-07 61.2 204 22.1
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 4.9e-07 61.2 147 31.3
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.9e-06 59.3 126 31.7
Cpa.g.sc273.7 Carica papaya HOM05D000001 ORTHO05D000003 4.2e-06 58.2 97 29.9
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 7.1e-06 57.4 96 32.3
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 9.3e-06 57.0 93 33.3


User provided reference genes

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