Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 2.8e-87 325.5 190 100.0
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.9e-67 259.6 173 80.3
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 6.0e-66 254.6 172 85.5
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 1.0e-65 253.8 174 84.5
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.1e-64 250.4 169 84.6
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.4e-62 243.4 169 83.4
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 5.1e-57 224.9 182 80.8
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 3.4e-53 212.2 177 74.0
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 7.1e-51 204.5 169 72.8
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 7.1e-51 204.5 169 72.8
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 1.2e-50 203.8 169 78.1
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.2e-50 203.8 184 69.0
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 6.0e-50 201.4 186 64.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 8.7e-49 197.6 171 67.3
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 8.7e-49 197.6 183 64.5
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 8.7e-49 197.6 183 64.5
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-48 196.8 191 70.7
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 9.6e-48 194.1 169 76.3
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 1.4e-46 190.3 169 75.7
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 1.3e-44 183.7 182 62.6
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.3e-44 183.7 182 62.6
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 1.2e-42 177.2 189 67.2
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.5e-40 170.2 188 60.1
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.8e-39 165.2 183 66.7
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 6.2e-39 164.9 175 57.7
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 4.9e-36 155.2 172 63.4
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 7.7e-21 104.8 193 44.6
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 7.7e-21 104.8 193 44.6
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 8.5e-20 101.3 189 42.9
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.4e-19 100.5 170 43.5
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.5e-19 99.8 183 47.5
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 8.8e-17 91.3 239 37.7
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 1.5e-16 90.5 178 37.1
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.5e-16 90.5 178 37.1
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.3e-15 87.4 213 38.0
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.2e-15 86.7 160 41.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.3e-15 85.1 160 43.1
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.4e-14 83.2 102 43.1
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 9.1e-14 81.3 225 29.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 9.1e-14 81.3 158 40.5
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.5e-13 80.5 222 30.6
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 4.5e-13 79.0 123 41.5
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 5.9e-13 78.6 220 30.9
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.0e-12 77.8 159 42.1
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.5e-12 75.1 206 30.6
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 1.4e-11 73.9 128 41.4
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 3.2e-11 72.8 130 39.2
Aa31LG3G12880 Aethionema arabicum HOM05D003238 ORTHO05D003571 7.2e-11 71.6 69 59.4
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.2e-11 71.6 206 30.6
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 7.2e-11 71.6 134 39.6
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 9.4e-11 71.2 173 33.5
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.4e-11 71.2 206 30.6
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.2e-10 70.9 228 34.6
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.6e-10 70.5 160 35.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 2.1e-10 70.1 211 33.6
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.1e-10 70.1 143 35.7
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.1e-10 70.1 158 39.2
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 2.1e-10 70.1 226 31.4
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.6e-10 69.3 162 38.3
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 7.9e-10 68.2 123 35.8
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.0e-09 67.8 159 39.0
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.3e-09 66.6 216 31.5
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 2.3e-09 66.6 222 27.9
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 3.9e-09 65.9 148 35.1
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 5.1e-09 65.5 149 33.6
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 8.8e-09 64.7 143 37.8
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 8.8e-09 64.7 144 42.4
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 8.8e-09 64.7 147 42.2
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 2.6e-08 63.2 140 32.9
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 2.6e-08 63.2 122 44.3
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 2.6e-08 63.2 133 39.8
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 3.3e-08 62.8 139 41.0
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.4e-08 62.4 194 27.3
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 5.7e-08 62.0 141 33.3
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 7.4e-08 61.6 142 31.0
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 7.4e-08 61.6 59 50.8
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 7.4e-08 61.6 50 54.0
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 9.7e-08 61.2 149 39.6
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 9.7e-08 61.2 124 44.4
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 9.7e-08 61.2 118 44.9
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 9.7e-08 61.2 137 31.4
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.7e-08 61.2 167 37.7
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.3e-07 60.8 135 42.2
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.7e-07 60.5 152 30.9
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.8e-07 59.7 116 44.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.8e-07 59.7 120 35.8
Sc18g0002230 Simmondsia chinensis HOM05D003238 ORTHO05D003571 2.8e-07 59.7 105 38.1
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 3.7e-07 59.3 129 38.0
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 3.7e-07 59.3 161 36.6
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 3.7e-07 59.3 69 49.3
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 3.7e-07 59.3 190 29.5
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 4.8e-07 58.9 114 45.6
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 4.8e-07 58.9 119 44.5
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 6.3e-07 58.5 115 45.2
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 6.3e-07 58.5 121 44.6
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.3e-07 58.5 67 44.8
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 8.2e-07 58.2 124 43.5
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 8.2e-07 58.2 125 42.4
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 8.2e-07 58.2 127 44.9
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.1e-06 57.8 118 43.2
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.1e-06 57.8 120 44.2
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 1.8e-06 57.0 60 55.0
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.8e-06 57.0 67 46.3
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.8e-06 57.0 63 65.1
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.8e-06 57.0 123 43.1
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.8e-06 57.0 119 44.5
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.8e-06 57.0 114 45.6
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.8e-06 57.0 137 38.7
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 2.4e-06 56.6 139 48.2
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.1e-06 56.2 122 43.4
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 4.1e-06 55.8 125 41.6
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 7.0e-06 55.1 114 44.7
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 7.0e-06 55.1 114 44.7
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 7.0e-06 55.1 115 44.3
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 7.0e-06 55.1 118 44.1
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.1e-06 54.7 135 39.3
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 9.1e-06 54.7 129 40.3


User provided reference genes

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