Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p13840 Brassica napus HOM05D002739 ORTHO05D002877 4.9e-60 234.2 111 100.0
BraA10t43477Z Brassica rapa HOM05D002739 ORTHO05D002877 4.9e-60 234.2 111 100.0
BolC9t57655H Brassica oleracea HOM05D002739 ORTHO05D002877 2.4e-54 215.3 103 98.1
C09p48080 Brassica napus HOM05D002739 ORTHO05D002877 1.6e-50 202.6 97 97.9
BcaC04g20084 Brassica carinata HOM05D002739 ORTHO05D002877 2.0e-45 185.7 89 97.8
AT5G56480 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 2.9e-44 181.8 108 79.6
CARHR270120 Cardamine hirsuta HOM05D002739 ORTHO05D002877 5.6e-40 167.5 108 68.5
AT1G32280 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 9.0e-38 160.2 111 71.2
Carub.0001s3061 Capsella rubella HOM05D002739 ORTHO05D002877 1.5e-37 159.5 111 69.4
BcaB05g22276 Brassica carinata HOM05D002739 ORTHO05D002877 1.3e-36 156.4 96 72.9
AL1G46440 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 2.9e-36 155.2 111 68.5
AL8G32240 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 5.4e-35 151.0 95 73.7
CARHR270130 Cardamine hirsuta HOM05D002739 ORTHO05D002877 1.3e-31 139.8 92 69.6
Duzib168G0958 Durio zibethinus HOM05D002739 ORTHO05D002877 1.8e-14 82.8 102 45.1
TWI74G0698 Tripterygium wilfordii HOM05D002739 ORTHO05D002877 2.6e-13 79.0 88 40.9
QL01p017875 Quercus lobata HOM05D002739 ORTHO05D002877 7.6e-13 77.4 112 35.7
QL04p013260 Quercus lobata HOM05D002739 ORTHO05D002877 7.6e-13 77.4 94 38.3
Manes.11G031500 Manihot esculenta HOM05D002739 ORTHO05D002877 1.0e-12 77.0 95 38.9
Haze_18708 Corylus avellana HOM05D002739 ORTHO05D002877 1.3e-12 76.6 78 48.7
Haze_23193 Corylus avellana HOM05D002739 ORTHO05D002877 1.3e-12 76.6 87 40.2
BcaC04g20086 Brassica carinata HOM05D002739 ORTHO05D002877 1.7e-12 76.3 47 70.2
Cpa.g.sc84.11 Carica papaya HOM05D002739 ORTHO05D002877 1.7e-12 76.3 81 46.9
CiPaw.13G010100 Carya illinoinensis HOM05D002739 ORTHO05D002877 1.7e-12 76.3 91 38.5
QL04p013227 Quercus lobata HOM05D002739 ORTHO05D002877 3.8e-12 75.1 102 38.2
Cfa009830 Carpinus fangiana HOM05D002739 ORTHO05D002877 6.5e-12 74.3 86 38.4
Manes.14G006100 Manihot esculenta HOM05D002739 ORTHO05D002877 8.5e-12 73.9 106 34.0
Manes.14G006000 Manihot esculenta HOM05D002739 ORTHO05D002877 1.1e-11 73.6 99 37.4
QL04p013222 Quercus lobata HOM05D002739 ORTHO05D002877 1.1e-11 73.6 99 35.4
PSO384G0435 Papaver somniferum HOM05D002739 ORTHO05D002877 1.4e-11 73.2 93 43.0
Manes.04G135500 Manihot esculenta HOM05D002739 ORTHO05D002877 2.5e-11 72.4 81 42.0
Ciclev10017652m.g Citrus clementina HOM05D002739 ORTHO05D002877 3.2e-11 72.0 75 45.3
COL.COLO4_04118 Corchorus olitorius HOM05D002739 ORTHO05D002877 3.2e-11 72.0 55 56.4
FvH4_3g29300 Fragaria vesca HOM05D002739 ORTHO05D002877 3.2e-11 72.0 101 33.7
QL04p013297 Quercus lobata HOM05D002739 ORTHO05D002877 3.2e-11 72.0 94 36.2
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 4.2e-11 71.6 95 40.0
Cfa021004 Carpinus fangiana HOM05D002739 ORTHO05D002877 5.5e-11 71.2 81 45.7
Ciclev10017233m.g Citrus clementina HOM05D002739 ORTHO05D002877 5.5e-11 71.2 103 35.0
Ciclev10017226m.g Citrus clementina HOM05D002739 ORTHO05D002877 7.2e-11 70.9 103 34.0
CANSAT80G1481 Cannabis sativa HOM05D002739 ORTHO05D002877 9.4e-11 70.5 90 41.1
PSO339G1495 Papaver somniferum HOM05D002739 ORTHO05D002877 9.4e-11 70.5 93 40.9
QL04p013280 Quercus lobata HOM05D002739 ORTHO05D002877 1.2e-10 70.1 95 37.9
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 2.1e-10 69.3 98 32.7
PGR031G3191 Punica granatum HOM05D002739 ORTHO05D002877 2.7e-10 68.9 98 34.7
CSS0000269 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 3.6e-10 68.6 107 39.3
CSS0014844 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 3.6e-10 68.6 107 39.3
CSS0046368 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 3.6e-10 68.6 107 39.3
CSS0048223 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 3.6e-10 68.6 107 39.3
Potri.001G023200 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.0e-09 67.0 99 31.3
Haze_03109 Corylus avellana HOM05D002215 ORTHO05D002238 1.4e-09 66.6 84 35.7
Potri.009G049300 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.4e-09 66.6 83 36.1
QL04p013244 Quercus lobata HOM05D002739 ORTHO05D002877 1.4e-09 66.6 90 34.4
FvH4_7g02210 Fragaria vesca HOM05D002739 ORTHO05D002877 1.8e-09 66.2 97 32.0
HanXRQChr01g0020811 Helianthus annuus HOM05D002739 ORTHO05D002877 1.8e-09 66.2 104 31.7
SGA_v2.0_scaffold24G10703 Striga asiatica HOM05D002739 ORTHO05D002877 1.8e-09 66.2 100 31.0
Actinidia19441 Actinidia chinensis HOM05D002739 ORTHO05D002877 2.3e-09 65.9 103 31.1
ECA238G2259 Erigeron canadensis HOM05D002739 ORTHO05D002877 2.3e-09 65.9 105 31.4
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 2.3e-09 65.9 73 38.4
PGR031G2149 Punica granatum HOM05D002739 ORTHO05D002877 2.3e-09 65.9 71 40.8
Zm00001eb369450 Zea mays HOM05D002739 ORTHO05D002877 2.3e-09 65.9 85 38.8
FAN10G1712 Fragaria x ananassa HOM05D002739 ORTHO05D002877 3.0e-09 65.5 97 32.0
QL04p013238 Quercus lobata HOM05D002739 ORTHO05D002877 3.0e-09 65.5 87 39.1
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 3.0e-09 65.5 101 31.7
THA.LOC104826487 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 3.0e-09 65.5 103 29.1
Ca_11246_v3 Cicer arietinum L. HOM05D002739 ORTHO05D002877 3.9e-09 65.1 93 32.3
TWI38G1066 Tripterygium wilfordii HOM05D002739 ORTHO05D002877 3.9e-09 65.1 97 32.0
Medtr4g076150 Medicago truncatula HOM05D002739 ORTHO05D002877 5.1e-09 64.7 93 33.3
PSO384G3631 Papaver somniferum HOM05D002739 ORTHO05D002877 5.1e-09 64.7 83 41.0
Dinv36202 Davidia involucrata HOM05D002739 ORTHO05D002877 6.7e-09 64.3 93 35.5
HanXRQChr14g0441021 Helianthus annuus HOM05D002739 ORTHO05D002877 6.7e-09 64.3 100 34.0
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 6.7e-09 64.3 93 33.3
TPR.G22564 Trifolium pratense HOM05D002739 ORTHO05D002877 6.7e-09 64.3 98 31.6
ECA236G2864 Erigeron canadensis HOM05D002739 ORTHO05D002877 8.8e-09 63.9 80 41.2
Oeu027475.1 Olea europaea HOM05D002739 ORTHO05D002877 8.8e-09 63.9 106 34.0
Duzib168G0444 Durio zibethinus HOM05D002739 ORTHO05D002877 1.1e-08 63.5 100 28.0
Gohir.A07G121800 Gossypium hirsutum HOM05D002739 ORTHO05D002877 1.1e-08 63.5 100 28.0
Gohir.D07G126100 Gossypium hirsutum HOM05D002739 ORTHO05D002877 1.1e-08 63.5 106 30.2
Nn7g36463 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.1e-08 63.5 112 33.9
Hund15707 Selenicereus undatus HOM05D002739 ORTHO05D002877 1.5e-08 63.2 83 34.9
Aqoxy2G02507 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 1.9e-08 62.8 85 34.1
AT2G13295 Arabidopsis thaliana HOM05D011315 ORTHO05D013409 1.9e-08 62.8 71 39.4
Thhalv10026604m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 1.9e-08 62.8 71 35.2
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 1.9e-08 62.8 108 32.4
Sabra01G0017500 Salix brachista HOM05D002739 ORTHO05D002877 1.9e-08 62.8 82 35.4
BcaB03g12793 Brassica carinata HOM05D002739 ORTHO05D002877 2.5e-08 62.4 71 33.8
BcaC01g00985 Brassica carinata HOM05D002739 ORTHO05D002877 2.5e-08 62.4 71 33.8
Carub.0003s2393 Capsella rubella HOM05D011315 ORTHO05D013409 2.5e-08 62.4 111 32.4
CARHR241650 Cardamine hirsuta HOM05D002739 ORTHO05D002877 2.5e-08 62.4 71 33.8
Sp7g31290 Schrenkiella parvula HOM05D002739 ORTHO05D002877 2.5e-08 62.4 71 33.8
Nn2g15046 Nelumbo nucifera HOM05D002739 ORTHO05D002877 3.3e-08 62.0 99 31.3
Nn7g36467 Nelumbo nucifera HOM05D002739 ORTHO05D002877 3.3e-08 62.0 94 33.0
Thecc.09G243100 Theobroma cacao HOM05D002739 ORTHO05D002877 3.3e-08 62.0 52 53.8
Atru.chr6.1312 Acer truncatum HOM05D002739 ORTHO05D002877 4.3e-08 61.6 94 29.8
Aqoxy2G00284 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 4.3e-08 61.6 103 31.1
CiPaw.13G010000 Carya illinoinensis HOM05D002739 ORTHO05D002877 4.3e-08 61.6 76 42.1
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 4.3e-08 61.6 102 29.4
Medtr4g077180 Medicago truncatula HOM05D002739 ORTHO05D002877 4.3e-08 61.6 93 32.3
Sabra01G0017600 Salix brachista HOM05D002739 ORTHO05D002877 4.3e-08 61.6 105 31.4
ATR0721G102 Amborella trichopoda HOM05D002739 ORTHO05D002877 5.7e-08 61.2 95 36.8
MBI13_g04764_MAGBIO Magnolia biondii HOM05D002739 ORTHO05D002877 5.7e-08 61.2 90 33.3
ATR0721G129 Amborella trichopoda HOM05D002739 ORTHO05D002877 7.4e-08 60.8 69 40.6
Nn7g36443 Nelumbo nucifera HOM05D002739 ORTHO05D002877 7.4e-08 60.8 98 34.7
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 7.4e-08 60.8 112 31.2
Nn7g38449 Nelumbo nucifera HOM05D002739 ORTHO05D002877 7.4e-08 60.8 98 34.7
THA.LOC104826714 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 7.4e-08 60.8 57 43.9
Thecc.09G243000 Theobroma cacao HOM05D002739 ORTHO05D002877 7.4e-08 60.8 82 32.9
AL7G17970 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 9.7e-08 60.5 62 37.1
arahy.Tifrunner.gnm1.ann1.ZFJ3WN Arachis hypogaea HOM05D002739 ORTHO05D002877 9.7e-08 60.5 98 26.5
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 9.7e-08 60.5 90 30.0
THA.LOC104819118 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 9.7e-08 60.5 57 43.9
TAR623G1716 Trochodendron aralioides HOM05D002739 ORTHO05D002877 9.7e-08 60.5 94 28.7
AT4G30880 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 1.3e-07 60.1 88 33.0
Thhalv10026851m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 1.3e-07 60.1 88 31.8
Glyma.12G022000 Glycine max HOM05D002739 ORTHO05D002877 1.3e-07 60.1 98 29.6
Lj3g0006865 Lotus japonicus HOM05D002739 ORTHO05D002877 1.3e-07 60.1 102 30.4
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.3e-07 60.1 104 30.8
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.3e-07 60.1 104 30.8
PSO339G0568 Papaver somniferum HOM05D002739 ORTHO05D002877 1.3e-07 60.1 85 35.3
GSVIVG01000855001 Vitis vinifera HOM05D002739 ORTHO05D002877 1.7e-07 59.7 67 37.3
AL7G21220 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 2.2e-07 59.3 99 29.3
AT4G33550 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 2.2e-07 59.3 71 32.4
BcaB03g12664 Brassica carinata HOM05D002739 ORTHO05D002877 2.2e-07 59.3 57 40.4
BcaC09g51875 Brassica carinata HOM05D002739 ORTHO05D002877 2.2e-07 59.3 88 35.2
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 2.2e-07 59.3 90 28.9
ATR0721G099 Amborella trichopoda HOM05D002739 ORTHO05D002877 2.8e-07 58.9 78 37.2
DCAR_022358 Daucus carota HOM05D002739 ORTHO05D002877 2.8e-07 58.9 100 34.0
Glyma.11G095900 Glycine max HOM05D002739 ORTHO05D002877 2.8e-07 58.9 98 29.6
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.8e-07 58.9 97 30.9
Aqoxy2G00278 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 3.7e-07 58.5 67 40.3
BcaB03g12794 Brassica carinata HOM05D002739 ORTHO05D002877 3.7e-07 58.5 71 29.6
CARHR238780 Cardamine hirsuta HOM05D002739 ORTHO05D002877 3.7e-07 58.5 105 28.6
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 3.7e-07 58.5 98 27.6
Lsat_1_v5_gn_1_97381 Lactuca sativa HOM05D002739 ORTHO05D002877 3.7e-07 58.5 97 38.1
MD02G1296400 Malus domestica HOM05D002739 ORTHO05D002877 3.7e-07 58.5 78 30.8
Prupe.4G257900 Prunus persica HOM05D002739 ORTHO05D002877 3.7e-07 58.5 53 43.4
Zm00001eb138660 Zea mays HOM05D002739 ORTHO05D002877 3.7e-07 58.5 64 42.2
Carub.0007s0967 Capsella rubella HOM05D002739 ORTHO05D002877 4.8e-07 58.2 108 26.9
Lalb_Chr04g0263901 Lupinus albus HOM05D002739 ORTHO05D002877 4.8e-07 58.2 76 36.8
Prupe.2G028100 Prunus persica HOM05D002739 ORTHO05D002877 4.8e-07 58.2 90 34.4
Sp7g28750 Schrenkiella parvula HOM05D002739 ORTHO05D002877 4.8e-07 58.2 105 26.7
MSTRG.21276 Avicennia marina HOM05D002739 ORTHO05D002877 6.3e-07 57.8 74 37.8
Os11g0484700 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 6.3e-07 57.8 56 46.4
Sc10g0004220 Simmondsia chinensis HOM05D002739 ORTHO05D002877 6.3e-07 57.8 83 32.5
HPP92_003585 Vanilla planifolia HOM05D002739 ORTHO05D002877 6.3e-07 57.8 85 31.8
arahy.Tifrunner.gnm1.ann1.YF5LNJ Arachis hypogaea HOM05D002739 ORTHO05D002877 8.2e-07 57.4 93 28.0
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 8.2e-07 57.4 90 28.9
Ciclev10017446m.g Citrus clementina HOM05D002739 ORTHO05D002877 8.2e-07 57.4 102 28.4
COL.COLO4_36502 Corchorus olitorius HOM05D002739 ORTHO05D002877 8.2e-07 57.4 57 42.1
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 8.2e-07 57.4 90 25.6
Aa31LG2G19500 Aethionema arabicum HOM05D002739 ORTHO05D002877 1.1e-06 57.0 103 30.1
PSO339G3199 Papaver somniferum HOM05D002739 ORTHO05D002877 1.1e-06 57.0 82 31.7
PSO384G1774 Papaver somniferum HOM05D002739 ORTHO05D002877 1.4e-06 56.6 98 28.6
PSO384G1879 Papaver somniferum HOM05D002739 ORTHO05D002877 1.4e-06 56.6 81 34.6
PSO384G3657 Papaver somniferum HOM05D002739 ORTHO05D002877 1.4e-06 56.6 98 28.6
SHI27456 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-06 56.6 53 39.6
Phvul.011G024000 Phaseolus vulgaris HOM05D002739 ORTHO05D002877 1.8e-06 56.2 58 39.7
Sabra09G0035300 Salix brachista HOM05D002739 ORTHO05D002877 1.8e-06 56.2 67 38.8
Sabra09G0035400 Salix brachista HOM05D002739 ORTHO05D002877 1.8e-06 56.2 67 38.8
Sabra09G0035500 Salix brachista HOM05D002739 ORTHO05D002877 1.8e-06 56.2 67 38.8
Zm00001eb419150 Zea mays HOM05D042461 ORTHO05D002877 1.8e-06 56.2 101 32.7
Psat1g130000 Pisum sativum HOM05D002739 ORTHO05D002877 2.4e-06 55.8 60 36.7
SMO236G0006 Selaginella moellendorffii HOM05D038626 ORTHO05D375303 2.4e-06 55.8 94 30.9
CiPaw.13G153200 Carya illinoinensis HOM05D002739 ORTHO05D002877 3.1e-06 55.5 100 35.0
Hma1.2p1_0817F.1_g223085 Hydrangea macrophylla HOM05D002739 ORTHO05D002877 3.1e-06 55.5 54 42.6
Hma1.2p1_2313F.1_g319610 Hydrangea macrophylla HOM05D002739 ORTHO05D002877 3.1e-06 55.5 54 42.6
Nn7g36466 Nelumbo nucifera HOM05D002739 ORTHO05D002877 3.1e-06 55.5 73 41.1
SMO187G0001 Selaginella moellendorffii HOM05D038626 ORTHO05D374465 3.1e-06 55.5 82 30.5
SMO236G0083 Selaginella moellendorffii HOM05D038626 ORTHO05D379396 3.1e-06 55.5 82 30.5
TAR622G0220 Trochodendron aralioides HOM05D002739 ORTHO05D002877 3.1e-06 55.5 93 30.1
Cpa.g.sc84.10 Carica papaya HOM05D002739 ORTHO05D002877 4.1e-06 55.1 64 37.5
Ciclev10018012m.g Citrus clementina HOM05D002739 ORTHO05D002877 4.1e-06 55.1 98 29.6
Os01g0800600 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 4.1e-06 55.1 77 40.3
PSO339G6632 Papaver somniferum HOM05D002739 ORTHO05D002877 4.1e-06 55.1 98 26.5
Sabra09G0035200 Salix brachista HOM05D002739 ORTHO05D002877 4.1e-06 55.1 67 37.3
Migut.D00796 Erythranthe guttata HOM05D002739 ORTHO05D002877 5.3e-06 54.7 89 31.5
Gorai.001G136100 Gossypium raimondii HOM05D002739 ORTHO05D002877 5.3e-06 54.7 93 29.0
Lj4g0026950 Lotus japonicus HOM05D002739 ORTHO05D002877 5.3e-06 54.7 74 36.5
Psat2g010760 Pisum sativum HOM05D002739 ORTHO05D002877 5.3e-06 54.7 101 31.7
Ciclev10017249m.g Citrus clementina HOM05D002739 ORTHO05D002877 6.9e-06 54.3 61 39.3
BcaC01g01134 Brassica carinata HOM05D002739 ORTHO05D002877 9.1e-06 53.9 95 29.5
BolC3t21155H Brassica oleracea HOM05D002739 ORTHO05D002877 9.1e-06 53.9 95 29.5
PSO384G3480 Papaver somniferum HOM05D002739 ORTHO05D002877 9.1e-06 53.9 57 38.6
GSVIVG01000856001 Vitis vinifera HOM05D002739 ORTHO05D002877 9.1e-06 53.9 67 35.8


User provided reference genes

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