Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.2e-117 425.6 209 100.0
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.1e-116 423.3 209 99.0
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 1.5e-115 419.5 209 98.1
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 1.7e-114 416.0 209 97.6
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.4e-113 412.9 208 97.6
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 2.6e-107 392.1 208 91.8
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 8.5e-106 387.1 209 89.0
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 1.9e-105 386.0 208 91.8
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 5.5e-105 384.4 208 89.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 6.1e-104 380.9 209 89.0
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 8.0e-104 380.6 208 88.9
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 8.2e-101 370.5 208 87.0
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 5.5e-97 357.8 208 84.1
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.8e-95 352.8 208 83.7
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 2.3e-95 352.4 208 84.1
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 4.0e-95 351.7 208 83.2
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 2.6e-94 349.0 208 81.7
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 2.7e-91 339.0 209 80.4
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 4.1e-84 315.1 209 75.6
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.5e-81 306.6 209 71.3
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 4.2e-81 305.1 209 71.3
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 9.5e-81 303.9 208 69.2
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 3.6e-80 302.0 208 68.3
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 1.8e-79 299.7 208 68.8
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 3.0e-79 298.9 217 68.2
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 5.2e-79 298.1 208 68.8
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 2.6e-78 295.8 208 67.8
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 3.4e-78 295.4 211 68.2
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 4.4e-78 295.0 217 66.8
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.3e-77 293.5 217 67.7
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 1.7e-77 293.1 218 65.1
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.8e-77 292.4 217 66.8
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 4.9e-77 291.6 211 67.8
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 5.4e-76 288.1 211 64.9
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 5.4e-76 288.1 211 65.4
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 5.4e-76 288.1 217 65.9
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 9.2e-76 287.3 217 64.1
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.2e-75 287.0 214 66.4
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 1.6e-75 286.6 215 67.0
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.7e-75 285.8 217 62.2
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.7e-75 285.8 217 65.0
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 3.5e-75 285.4 216 64.8
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 3.5e-75 285.4 217 65.9
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 7.8e-75 284.3 217 61.8
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.8e-75 284.3 211 64.5
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.3e-74 283.5 217 63.6
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.7e-74 283.1 218 64.2
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.7e-74 283.1 211 64.9
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.7e-74 283.1 217 64.1
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 2.3e-74 282.7 217 64.5
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 2.3e-74 282.7 211 64.5
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.3e-74 282.7 217 62.7
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.9e-74 282.3 217 64.5
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 2.9e-74 282.3 217 63.6
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.9e-74 282.3 218 61.9
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 8.6e-74 280.8 211 63.0
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.1e-73 280.4 210 65.7
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.9e-73 279.6 217 63.6
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.9e-73 279.6 211 64.5
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 2.5e-73 279.3 198 66.7
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.3e-73 278.9 217 60.8
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 5.6e-73 278.1 218 61.9
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 5.6e-73 278.1 217 62.7
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 5.6e-73 278.1 217 61.8
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 5.6e-73 278.1 216 63.9
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 7.3e-73 277.7 218 63.3
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.2e-72 276.9 217 63.6
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 1.2e-72 276.9 211 63.5
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.6e-72 276.6 209 66.5
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.8e-72 275.8 209 66.5
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 3.6e-72 275.4 217 63.1
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 6.1e-72 274.6 254 56.7
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.0e-71 273.9 218 62.4
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.0e-71 273.9 211 62.6
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 1.0e-71 273.9 216 62.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.4e-71 273.5 209 65.1
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.4e-71 273.5 217 62.2
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 4.0e-71 271.9 215 63.3
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 6.8e-71 271.2 211 61.1
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 2.0e-70 269.6 220 65.9
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 2.0e-70 269.6 187 69.0
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 2.6e-70 269.2 209 64.6
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 5.8e-70 268.1 199 65.3
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 5.8e-70 268.1 217 61.3
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.7e-69 266.5 211 58.8
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 8.3e-69 264.2 216 63.0
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 1.9e-68 263.1 216 62.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 1.0e-66 257.3 207 63.3
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 2.3e-66 256.1 186 66.7
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 3.9e-66 255.4 219 58.4
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.5e-65 253.4 241 55.6
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 4.3e-65 251.9 197 61.9
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 3.6e-64 248.8 217 58.5
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 4.7e-64 248.4 138 87.0
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 8.0e-64 247.7 230 61.3
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 5.2e-63 245.0 174 66.7
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 8.9e-63 244.2 173 67.6
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.2e-62 243.8 173 68.2
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.5e-62 243.4 190 63.2
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 7.5e-62 241.1 212 56.6
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.7e-61 240.0 213 54.0
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 6.4e-61 238.0 237 51.5
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.3e-61 237.7 210 52.9
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-59 233.8 213 55.4
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 3.5e-59 232.3 167 65.9
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 4.6e-59 231.9 166 66.9
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.7e-58 229.9 213 52.1
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 5.1e-58 228.4 217 55.8
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.6e-58 227.6 213 51.2
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 1.5e-57 226.9 229 51.1
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 5.6e-57 224.9 149 71.1
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 7.3e-57 224.6 207 55.1
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 9.5e-57 224.2 177 64.4
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.8e-55 219.9 213 55.4
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 4.0e-55 218.8 177 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.9e-55 217.6 219 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.6e-54 216.1 219 52.1
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.7e-50 203.4 216 53.7
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-49 198.7 194 52.1
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.6e-48 196.8 129 72.1
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 5.2e-47 191.8 211 49.8
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.5e-46 190.3 138 65.9
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.4e-46 189.1 167 54.5
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 7.6e-46 188.0 197 52.3
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 9.9e-46 187.6 166 62.7
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 2.9e-45 186.0 173 55.5
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.9e-45 186.0 167 53.3
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.3e-42 177.2 216 48.6
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 3.0e-42 176.0 190 49.5
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.8e-40 168.7 173 51.4
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.8e-39 166.8 160 52.5
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 7.6e-38 161.4 215 47.9
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.2e-37 159.8 116 68.1
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 4.2e-36 155.6 192 43.2
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.6e-32 143.7 100 68.0
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 4.8e-32 142.1 107 60.7
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 6.7e-26 121.7 252 34.9
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 1.9e-25 120.2 81 70.4
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.0e-21 107.8 75 69.3
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.3e-21 107.5 77 62.3
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 5.5e-20 102.1 77 66.2
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 7.9e-19 98.2 150 38.7
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.0e-13 81.3 72 56.9
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 8.4e-13 78.2 52 63.5
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 2.7e-11 73.2 65 60.0
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.9e-10 69.3 130 35.4
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 1.6e-08 63.9 84 38.1
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.6e-08 63.9 43 65.1
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.6e-08 63.9 54 51.9
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.8e-07 60.5 77 37.7


User provided reference genes

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