Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 6.0e-150 534.3 290 100.0
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 4.7e-147 524.6 294 96.9
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 8.4e-144 513.8 290 96.6
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 7.8e-142 507.3 290 95.9
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 8.9e-138 493.8 305 89.8
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 8.7e-133 477.2 294 89.8
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.8e-117 426.4 292 80.5
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 3.0e-117 425.6 296 80.4
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 3.8e-112 408.7 301 77.7
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 1.4e-111 406.8 296 77.4
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 1.8e-109 399.8 296 77.4
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 6.7e-101 371.3 303 71.3
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.4e-98 362.8 304 70.1
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.2e-94 350.5 307 67.8
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 1.0e-93 347.4 285 70.9
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 7.7e-89 331.3 304 66.1
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.6e-70 270.4 315 56.2
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 5.2e-61 238.8 322 49.1
BolC2t07792H Brassica oleracea HOM05D003841 ORTHO05D004602 4.0e-45 186.0 256 46.9
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.7e-35 154.1 333 38.7
BcaC03g14305 Brassica carinata HOM05D003841 ORTHO05D004602 4.9e-35 152.5 219 45.2
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 4.9e-35 152.5 303 37.6
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 8.3e-35 151.8 304 37.8
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 7.8e-33 145.2 309 37.9
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 1.0e-32 144.8 326 38.3
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 5.1e-32 142.5 303 37.0
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 1.1e-31 141.4 309 36.6
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.5e-31 141.0 329 38.6
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 3.3e-31 139.8 325 36.6
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 9.5e-31 138.3 316 35.8
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 2.1e-30 137.1 336 36.9
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.6e-30 136.3 316 35.4
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 8.1e-30 135.2 340 36.2
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.8e-29 132.1 322 35.4
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.2e-28 131.3 336 36.3
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 2.0e-28 130.6 336 36.9
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 2.6e-28 130.2 331 37.2
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.6e-28 130.2 321 34.6
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 4.4e-28 129.4 285 36.8
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.4e-28 129.4 321 34.3
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 7.6e-28 128.6 323 33.1
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 7.6e-28 128.6 319 35.4
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 7.6e-28 128.6 326 34.4
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.3e-27 127.9 302 35.4
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.3e-27 127.9 325 33.8
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.7e-27 127.5 341 35.2
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.2e-27 127.1 312 37.5
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.9e-27 126.7 342 33.9
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 3.8e-27 126.3 342 34.2
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 4.9e-27 125.9 327 32.7
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 6.4e-27 125.6 325 35.4
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 8.4e-27 125.2 209 43.1
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.1e-26 124.8 335 35.2
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 1.4e-26 124.4 315 36.8
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 3.2e-26 123.2 331 34.7
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 3.2e-26 123.2 317 35.0
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 5.4e-26 122.5 318 34.0
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.4e-26 122.5 329 36.5
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 7.1e-26 122.1 318 33.0
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 7.1e-26 122.1 324 35.5
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 7.1e-26 122.1 319 35.1
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 7.1e-26 122.1 347 32.0
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.6e-25 120.9 326 35.6
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.6e-25 120.9 314 36.6
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.1e-25 120.6 328 34.1
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 6.0e-25 119.0 306 33.7
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.8e-25 118.6 322 34.2
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 7.8e-25 118.6 322 34.8
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.0e-24 118.2 334 34.4
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.3e-24 117.9 322 34.5
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 1.7e-24 117.5 338 35.2
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.7e-24 117.5 322 33.5
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.3e-24 117.1 354 32.2
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.3e-24 117.1 338 32.0
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 3.0e-24 116.7 314 34.1
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.0e-24 116.7 347 31.7
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 3.9e-24 116.3 324 33.6
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 5.1e-24 115.9 305 34.8
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 5.1e-24 115.9 310 32.3
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 5.1e-24 115.9 314 31.8
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 6.6e-24 115.5 321 33.3
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 8.6e-24 115.2 323 30.7
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 1.1e-23 114.8 331 33.8
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.5e-23 114.4 356 32.6
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.9e-23 114.0 328 32.6
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.9e-23 114.0 284 36.3
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.3e-23 113.2 320 34.4
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 5.6e-23 112.5 338 33.4
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 7.3e-23 112.1 322 32.9
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 7.3e-23 112.1 322 32.9
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 7.3e-23 112.1 269 40.1
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.2e-22 111.3 322 30.7
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 2.1e-22 110.5 319 32.3
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 2.8e-22 110.2 319 30.4
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 4.7e-22 109.4 323 33.4
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 4.7e-22 109.4 324 34.0
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 6.2e-22 109.0 324 34.6
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.1e-21 108.2 306 35.6
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 1.1e-21 108.2 337 30.6
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 1.4e-21 107.8 322 33.5
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 3.1e-21 106.7 325 31.7
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 4.0e-21 106.3 326 30.7
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 4.0e-21 106.3 311 33.4
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.2e-20 104.8 316 31.6
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 1.2e-20 104.8 320 32.8
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 2.0e-20 104.0 221 42.5
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 2.0e-20 104.0 240 34.6
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 2.0e-20 104.0 306 33.7
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 4.4e-20 102.8 324 33.6
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 4.4e-20 102.8 331 32.6
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 4.4e-20 102.8 323 30.7
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 7.6e-20 102.1 318 32.1
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.7e-19 100.9 243 34.6
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 3.8e-19 99.8 328 29.9
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 3.8e-19 99.8 221 36.2
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 4.9e-19 99.4 334 32.3
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 8.4e-19 98.6 281 34.2
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.4e-18 97.8 324 31.8
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 1.9e-18 97.4 300 32.7
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 3.2e-18 96.7 338 30.5
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 1.6e-17 94.4 308 31.2
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 2.7e-17 93.6 315 30.8
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 2.7e-17 93.6 334 32.9
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 3.5e-17 93.2 333 32.4
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 6.0e-17 92.4 322 32.0
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 6.0e-17 92.4 330 31.8
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 1.0e-16 91.7 323 30.0
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 3.9e-16 89.7 273 32.2
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 6.6e-16 89.0 314 32.5
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.1e-15 88.2 311 29.9
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 1.5e-15 87.8 329 29.5
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 1.5e-15 87.8 316 29.7
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 3.3e-15 86.7 191 43.5
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 3.3e-15 86.7 314 29.6
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 5.6e-15 85.9 256 31.2
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 9.6e-15 85.1 354 29.9
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 2.1e-14 84.0 328 29.6
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 4.8e-14 82.8 112 45.5
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 6.2e-14 82.4 324 29.9
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 6.2e-14 82.4 241 29.9
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 6.9e-13 79.0 256 30.5
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 9.0e-13 78.6 243 29.6
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 5.8e-12 75.9 213 31.9
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 1.3e-11 74.7 213 31.5
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.7e-11 74.3 180 38.3
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 3.8e-11 73.2 193 36.3
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 1.1e-10 71.6 225 33.3
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 1.9e-10 70.9 332 25.9
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.4e-10 70.5 246 32.5
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.2e-10 70.1 241 32.4
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 4.2e-10 69.7 124 50.8
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 4.2e-10 69.7 118 45.8
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 5.4e-10 69.3 315 28.6
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 2.7e-09 67.0 205 26.8
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 2.7e-09 67.0 159 34.0
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 4.6e-09 66.2 333 25.2
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 6.0e-09 65.9 154 36.4
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.7e-08 62.4 237 30.8
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 3.3e-07 60.1 352 26.4
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 7.4e-07 58.9 211 30.8
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 4.8e-06 56.2 166 28.3
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 8.1e-06 55.5 122 42.6


User provided reference genes

Program Settings