Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 9.1e-66 253.4 129 100.0
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.8e-56 221.5 117 96.6
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.1e-55 219.9 117 95.7
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 5.7e-52 207.6 117 89.7
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.3e-40 169.9 108 78.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 9.4e-39 163.7 107 78.5
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 9.4e-39 163.7 107 78.5
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 4.7e-38 161.4 106 77.4
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 8.0e-38 160.6 106 78.3
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 4.8e-35 151.4 94 80.9
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.0e-29 132.1 106 66.0
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 8.8e-29 130.6 101 68.3
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 1.3e-27 126.7 110 60.0
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.2e-27 125.9 106 60.4
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 8.3e-27 124.0 109 55.0
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 2.4e-26 122.5 110 58.2
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 2.4e-26 122.5 111 55.9
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.1e-26 122.1 110 56.4
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 5.4e-26 121.3 109 55.0
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 5.4e-26 121.3 109 56.0
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.4e-26 121.3 109 56.0
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 5.4e-26 121.3 107 57.9
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.0e-26 120.9 109 56.0
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.2e-26 120.6 109 55.0
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 9.2e-26 120.6 110 55.5
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 9.2e-26 120.6 110 55.5
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.2e-25 120.2 109 54.1
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 2.0e-25 119.4 109 56.9
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.7e-25 119.0 109 53.2
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.7e-25 119.0 109 56.9
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.5e-25 118.6 109 55.0
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.5e-25 118.6 115 53.9
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.5e-25 118.2 109 55.0
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 4.5e-25 118.2 110 56.4
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 4.5e-25 118.2 109 55.0
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 4.5e-25 118.2 109 54.1
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 4.5e-25 118.2 109 55.0
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 7.8e-25 117.5 110 54.5
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.8e-25 117.5 109 54.1
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 7.8e-25 117.5 110 51.8
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.0e-24 117.1 109 53.2
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.0e-24 117.1 112 54.5
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.3e-24 116.7 109 55.0
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.3e-24 116.7 107 54.2
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 5.0e-24 114.8 112 51.8
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 6.6e-24 114.4 109 56.0
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.1e-23 113.6 103 58.3
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.1e-23 113.6 104 52.9
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.5e-23 112.5 106 51.9
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.3e-23 112.1 104 53.8
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.3e-23 111.7 106 51.9
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.3e-23 111.7 102 56.9
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.3e-23 111.7 102 56.9
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 4.3e-23 111.7 106 51.9
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 4.3e-23 111.7 106 53.8
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.6e-23 111.3 106 53.8
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 7.3e-23 110.9 106 52.8
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.2e-22 110.2 102 55.9
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 2.1e-22 109.4 109 50.5
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 2.1e-22 109.4 109 50.5
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 2.8e-22 109.0 102 55.9
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 3.6e-22 108.6 108 48.1
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 3.6e-22 108.6 109 51.4
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 4.7e-22 108.2 106 53.8
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 6.1e-22 107.8 109 53.2
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 6.1e-22 107.8 104 56.7
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 8.0e-22 107.5 131 45.0
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 8.0e-22 107.5 109 51.4
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 8.0e-22 107.5 102 55.9
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 8.0e-22 107.5 102 54.9
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.0e-21 107.1 110 50.0
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.0e-21 107.1 109 51.4
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.4e-21 106.7 103 54.4
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.4e-21 106.7 102 54.9
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.3e-21 105.9 112 49.1
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.3e-21 105.9 112 49.1
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.3e-21 105.9 104 51.0
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 3.0e-21 105.5 104 50.0
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 4.0e-21 105.1 104 50.0
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 4.0e-21 105.1 90 56.7
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 4.0e-21 105.1 90 56.7
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 8.9e-21 104.0 109 48.6
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.6e-20 102.4 89 56.2
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 3.4e-20 102.1 110 50.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 7.5e-20 100.9 109 46.8
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.9e-19 99.0 107 47.7
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 4.9e-19 98.2 108 48.1
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 4.9e-19 98.2 104 46.2
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.4e-18 96.7 105 47.6
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 2.4e-18 95.9 53 94.3
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 3.2e-18 95.5 109 45.9
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 4.1e-18 95.1 99 50.5
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 4.1e-18 95.1 102 48.0
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 5.4e-18 94.7 109 45.0
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 9.2e-18 94.0 87 52.9
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.2e-17 93.6 108 45.4
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 5.9e-17 91.3 102 45.1
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 2.3e-16 89.4 75 61.3
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.9e-15 86.3 123 39.8
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.8e-14 82.4 103 43.7
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.7e-14 81.6 108 38.9
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 2.3e-13 79.3 53 77.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.0e-13 78.6 102 39.2
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 5.2e-13 78.2 51 84.3
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 8.9e-13 77.4 53 75.5
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.1e-10 70.5 109 34.9
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.2e-09 67.0 91 40.7
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 4.6e-09 65.1 60 51.7
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.0e-08 63.9 57 50.9
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.3e-08 63.5 60 50.0
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.7e-08 63.2 70 51.4
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 3.0e-08 62.4 101 32.7
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.6e-08 61.2 52 61.5
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.6e-08 61.2 52 61.5
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 7.3e-07 57.8 45 66.7
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.3e-07 57.8 56 46.4
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.2e-06 57.0 51 60.8
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 3.6e-06 55.5 49 61.2
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 6.2e-06 54.7 58 39.7


User provided reference genes

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