Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 0.0e+00 1407.1 726 100.0
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 0.0e+00 1405.6 726 99.9
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 0.0e+00 1373.2 726 97.8
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 0.0e+00 1373.2 726 97.8
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 0.0e+00 1373.2 726 97.8
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 0.0e+00 1354.3 725 96.0
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 0.0e+00 1303.9 728 92.4
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 0.0e+00 1255.7 728 89.1
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 0.0e+00 1248.8 728 88.5
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 0.0e+00 1246.1 728 87.8
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 0.0e+00 1243.0 729 88.1
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 0.0e+00 1164.8 727 82.9
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 0.0e+00 1133.2 727 80.5
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 2.6e-279 965.3 725 67.3
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 1.8e-275 952.6 723 67.2
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 3.9e-275 951.4 735 66.0
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 7.4e-274 947.2 725 66.3
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 5.3e-272 941.0 728 66.9
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 4.6e-268 927.9 723 65.0
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 7.9e-268 927.2 727 64.4
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 8.8e-267 923.7 723 64.6
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 1.5e-266 922.9 722 64.5
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 1.7e-265 919.5 724 63.8
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 2.8e-265 918.7 726 64.7
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 2.8e-265 918.7 723 65.0
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 4.8e-265 917.9 722 64.0
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 6.3e-265 917.5 724 64.6
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 6.3e-265 917.5 723 63.8
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 3.1e-264 915.2 723 64.7
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 2.0e-263 912.5 722 64.3
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 2.5e-261 905.6 724 63.8
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 7.2e-261 904.0 723 64.3
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 9.4e-261 903.7 723 63.6
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 1.6e-260 902.9 716 62.8
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 6.7e-259 897.5 722 63.4
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 6.7e-259 897.5 717 63.0
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 1.3e-257 893.3 697 66.0
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 1.3e-257 893.3 730 63.6
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 2.8e-257 892.1 726 62.0
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 6.3e-257 891.0 727 64.0
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 1.8e-256 889.4 722 63.7
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 2.4e-256 889.0 725 63.0
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.4e-256 889.0 725 63.0
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 4.1e-256 888.3 727 63.8
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 7.0e-256 887.5 723 62.0
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.2e-255 886.7 720 63.8
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.5e-255 886.3 725 62.9
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.7e-254 882.9 725 62.5
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 2.2e-254 882.5 834 56.2
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 2.9e-254 882.1 726 62.5
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 8.5e-254 880.6 730 63.2
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 2.6e-250 869.0 719 61.8
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 3.3e-250 868.6 730 60.5
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 1.2e-247 860.1 791 58.0
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 4.5e-247 858.2 724 61.2
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 5.9e-247 857.8 723 61.5
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 7.7e-247 857.4 724 61.2
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 5.0e-246 854.7 720 60.8
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 5.7e-242 841.3 719 59.9
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 2.2e-241 839.3 725 59.7
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 2.4e-240 835.9 721 60.5
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 1.6e-239 833.2 721 58.7
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 1.3e-238 830.1 721 58.7
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 1.9e-237 826.2 723 58.4
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 9.4e-237 823.9 715 58.5
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 1.2e-236 823.5 722 59.0
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 2.1e-236 822.8 723 58.4
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 3.0e-235 818.9 723 57.1
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 1.5e-234 816.6 620 66.1
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 1.1e-232 810.4 716 59.1
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.1e-232 810.4 722 57.2
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 2.0e-231 806.2 724 58.1
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 2.7e-231 805.8 696 58.3
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 4.0e-227 792.0 723 58.4
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 1.7e-225 786.6 722 55.8
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 2.2e-225 786.2 724 57.0
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 6.8e-211 738.0 650 57.8
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.7e-206 723.4 726 52.3
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.7e-206 723.4 726 52.5
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 6.0e-199 698.4 433 82.0
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 1.3e-198 697.2 698 52.1
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 1.9e-189 666.8 665 51.6
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.5e-186 657.1 478 67.2
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 1.4e-184 650.6 590 58.6
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 1.8e-179 633.6 734 49.0
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 6.9e-179 631.7 393 82.2
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 3.1e-163 579.7 678 47.2
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 1.2e-159 567.8 663 46.8
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 9.7e-157 558.1 472 61.2
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.5e-154 550.8 669 44.5
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 1.9e-152 543.9 438 64.8
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.9e-150 536.2 671 46.8
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 2.6e-149 533.5 668 43.7
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 5.3e-139 499.2 594 45.6
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 1.5e-136 491.1 296 85.5
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.2e-135 488.0 666 42.0
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 8.8e-118 428.7 504 46.0
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 8.8e-118 428.7 426 52.1
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 2.0e-117 427.6 393 57.8
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 6.4e-108 396.0 375 54.7
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 2.0e-106 391.0 669 35.0
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.6e-105 386.0 480 46.5
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 5.8e-101 372.9 312 65.4
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 2.4e-99 367.5 337 57.3
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 5.2e-94 349.7 325 59.4
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 2.7e-90 337.4 304 54.3
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 3.1e-86 323.9 583 37.4
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 2.7e-82 310.8 228 69.3
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 4.6e-82 310.1 264 62.1
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 1.8e-70 271.6 237 56.5
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.3e-57 228.8 155 74.8
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.1e-56 225.7 214 51.9
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 6.3e-47 193.4 161 64.6
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 3.9e-33 147.5 149 48.3
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 9.7e-32 142.9 136 52.9
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 5.0e-28 130.6 732 25.7
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.3e-20 105.9 69 69.6
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 3.7e-15 87.8 66 60.6
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 4.5e-13 80.9 99 41.4


User provided reference genes

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