Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p08520 Brassica napus HOM05D004000 ORTHO05D004629 9.4e-21 102.4 47 100.0
BcaB06g25514 Brassica carinata HOM05D004000 ORTHO05D004629 1.8e-16 88.2 46 87.0
BcaC05g29239 Brassica carinata HOM05D004000 ORTHO05D004629 1.8e-16 88.2 46 87.0
A05p36700 Brassica napus HOM05D004000 ORTHO05D004629 1.8e-16 88.2 46 87.0
C05p55150 Brassica napus HOM05D004000 ORTHO05D004629 1.8e-16 88.2 46 87.0
BolC5t34183H Brassica oleracea HOM05D004000 ORTHO05D004629 1.8e-16 88.2 46 87.0
BraA05t22474Z Brassica rapa HOM05D004000 ORTHO05D004629 1.8e-16 88.2 46 87.0
BcaB04g21038 Brassica carinata HOM05D004000 ORTHO05D004629 2.4e-16 87.8 46 87.0
Sp3g10920 Schrenkiella parvula HOM05D004000 ORTHO05D004629 2.4e-16 87.8 46 87.0
AL3G24440 Arabidopsis lyrata HOM05D004000 ORTHO05D004629 5.3e-16 86.7 46 84.8
A03p37780 Brassica napus HOM05D001323 ORTHO05D001223 5.3e-16 86.7 46 84.8
BraA03t12933Z Brassica rapa HOM05D001323 ORTHO05D001223 5.3e-16 86.7 46 84.8
BcaB04g18717 Brassica carinata HOM05D001323 ORTHO05D001223 7.0e-16 86.3 46 84.8
Thhalv10021347m.g Eutrema salsugineum HOM05D004000 ORTHO05D004629 1.2e-15 85.5 45 84.4
A01p40750 Brassica napus HOM05D004000 ORTHO05D004629 2.0e-15 84.7 46 82.6
C03p45850 Brassica napus HOM05D001323 ORTHO05D001223 2.0e-15 84.7 46 82.6
BolC1t05181H Brassica oleracea HOM05D004000 ORTHO05D004629 2.0e-15 84.7 46 82.6
BolC3t16860H Brassica oleracea HOM05D001323 ORTHO05D001223 2.0e-15 84.7 46 82.6
CARHR087290 Cardamine hirsuta HOM05D004000 ORTHO05D004629 2.0e-15 84.7 45 82.2
AT3G12760 Arabidopsis thaliana HOM05D004000 ORTHO05D004629 2.6e-15 84.3 46 82.6
BcaC01g04031 Brassica carinata HOM05D001323 ORTHO05D001223 2.6e-15 84.3 46 82.6
BcaC01g04032 Brassica carinata HOM05D004000 ORTHO05D004629 2.6e-15 84.3 46 82.6
BcaC09g48261 Brassica carinata HOM05D004000 ORTHO05D004629 2.6e-15 84.3 46 82.6
C01p52380 Brassica napus HOM05D004000 ORTHO05D004629 2.6e-15 84.3 46 82.6
BraA01t04109Z Brassica rapa HOM05D004000 ORTHO05D004629 2.6e-15 84.3 45 82.2
Carub.0003s1212 Capsella rubella HOM05D004000 ORTHO05D004629 2.6e-15 84.3 46 82.6
Hund20115 Selenicereus undatus HOM05D004000 ORTHO05D004629 1.0e-14 82.4 45 77.8
Aa31LG8G60 Aethionema arabicum HOM05D004000 ORTHO05D004629 2.9e-14 80.9 45 80.0
EL10Ac2g03287 Beta vulgaris HOM05D004000 ORTHO05D004629 2.9e-14 80.9 45 73.3
Sc10g0007870 Simmondsia chinensis HOM05D004000 ORTHO05D004629 5.0e-14 80.1 45 77.8
AUR62037658 Chenopodium quinoa HOM05D004000 ORTHO05D004629 6.5e-14 79.7 45 71.1
AUR62040875 Chenopodium quinoa HOM05D004000 ORTHO05D004629 8.5e-14 79.3 45 71.1
Duzib187G0240 Durio zibethinus HOM05D004000 ORTHO05D004629 1.5e-13 78.6 45 75.6
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 1.9e-13 78.2 45 68.9
Nn8g41219 Nelumbo nucifera HOM05D004000 ORTHO05D004629 1.9e-13 78.2 45 75.6
Eucgr.F01477 Eucalyptus grandis HOM05D004000 ORTHO05D004629 2.5e-13 77.8 45 75.6
Aa31LG10G40 Aethionema arabicum HOM05D004000 ORTHO05D004629 4.2e-13 77.0 45 73.3
Cpa.g.sc32.66 Carica papaya HOM05D004000 ORTHO05D004629 4.2e-13 77.0 45 73.3
Lj2C12T8 Lonicera japonica HOM05D004000 ORTHO05D004629 4.2e-13 77.0 45 73.3
Nitab4.5_0000029g0230 Nicotiana tabacum HOM05D004000 ORTHO05D004629 4.2e-13 77.0 45 75.6
Nitab4.5_0006109g0060 Nicotiana tabacum HOM05D004000 ORTHO05D004629 4.2e-13 77.0 45 75.6
THA.LOC104810272 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 4.2e-13 77.0 45 71.1
GSVIVG01036747001 Vitis vinifera HOM05D004000 ORTHO05D004629 5.5e-13 76.6 45 71.1
Potri.008G083800 Populus trichocarpa HOM05D004000 ORTHO05D004629 7.2e-13 76.3 45 73.3
TAR629G3216 Trochodendron aralioides HOM05D004000 ORTHO05D004629 7.2e-13 76.3 44 75.0
HPP92_020395 Vanilla planifolia HOM05D004000 ORTHO05D004629 7.2e-13 76.3 43 74.4
Atru.chr1.77 Acer truncatum HOM05D004000 ORTHO05D004629 9.4e-13 75.9 45 73.3
Actinidia12763 Actinidia chinensis HOM05D004000 ORTHO05D004629 9.4e-13 75.9 45 73.3
Actinidia24665 Actinidia chinensis HOM05D004000 ORTHO05D004629 9.4e-13 75.9 45 73.3
CDE05G1666 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 9.4e-13 75.9 45 68.9
ECA236G3922 Erigeron canadensis HOM05D004000 ORTHO05D004629 9.4e-13 75.9 45 73.3
Lsat_1_v5_gn_7_110801 Lactuca sativa HOM05D004000 ORTHO05D004629 9.4e-13 75.9 45 71.1
Peaxi162Scf00452g00229 Petunia axillaris HOM05D004000 ORTHO05D004629 9.4e-13 75.9 45 71.1
PGR004G2637 Punica granatum HOM05D004000 ORTHO05D004629 9.4e-13 75.9 45 71.1
MD05G1234900 Malus domestica HOM05D004000 ORTHO05D004629 1.2e-12 75.5 45 68.9
TWI38G0870 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 1.2e-12 75.5 45 73.3
AagrBONN_evm.TU.Sc2ySwM_117.2611 Anthoceros agrestis HOM05D004000 ORTHO05D004629 1.6e-12 75.1 42 73.8
Ciclev10005712m.g Citrus clementina HOM05D004000 ORTHO05D004629 1.6e-12 75.1 44 75.0
Dinv19580 Davidia involucrata HOM05D004000 ORTHO05D004629 1.6e-12 75.1 45 73.3
Actinidia37130 Actinidia chinensis HOM05D004000 ORTHO05D004629 2.1e-12 74.7 45 71.1
CSS0006140 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 2.1e-12 74.7 45 71.1
Cc05_g16490 Coffea canephora HOM05D004000 ORTHO05D004629 2.1e-12 74.7 45 66.7
Duzib213G0764 Durio zibethinus HOM05D004000 ORTHO05D004629 2.1e-12 74.7 44 72.7
Gohir.A08G231700 Gossypium hirsutum HOM05D004000 ORTHO05D004629 2.1e-12 74.7 44 72.7
Thecc.07G186500 Theobroma cacao HOM05D004000 ORTHO05D004629 2.1e-12 74.7 44 72.7
PSO339G1394 Papaver somniferum HOM05D004000 ORTHO05D004629 2.7e-12 74.3 45 66.7
Prupe.4G131300 Prunus persica HOM05D004000 ORTHO05D004629 2.7e-12 74.3 45 66.7
vmacro11690 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 2.7e-12 74.3 45 71.1
Rhsim06G0243100 Rhododendron simsii HOM05D004000 ORTHO05D004629 3.6e-12 73.9 45 71.1
SGA_v2.0_scaffold49G18199 Striga asiatica HOM05D004000 ORTHO05D004629 3.6e-12 73.9 45 68.9
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 3.6e-12 73.9 45 68.9
QL04p091152 Quercus lobata HOM05D004000 ORTHO05D004629 4.7e-12 73.6 44 70.5
QL04p092275 Quercus lobata HOM05D004000 ORTHO05D004629 4.7e-12 73.6 44 70.5
Solyc07g066650.4 Solanum lycopersicum HOM05D004000 ORTHO05D004629 4.7e-12 73.6 44 72.7
Sopen07g034800 Solanum pennellii HOM05D004000 ORTHO05D004629 4.7e-12 73.6 44 72.7
TWI59G1464 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 4.7e-12 73.6 45 71.1
ClCG09G022790 Citrullus lanatus HOM05D004000 ORTHO05D004629 6.1e-12 73.2 44 70.5
HanXRQChr04g0125331 Helianthus annuus HOM05D004000 ORTHO05D004629 6.1e-12 73.2 44 70.5
Oeu034052.1 Olea europaea HOM05D004000 ORTHO05D004629 6.1e-12 73.2 45 68.9
Pp3c12_24690 Physcomitrium patens HOM05D004000 ORTHO05D004629 6.1e-12 73.2 43 72.1
vmacro09768 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 6.1e-12 73.2 45 68.9
CANSAT56G1070 Cannabis sativa HOM05D004000 ORTHO05D004629 8.0e-12 72.8 44 68.2
FAN11G2975 Fragaria x ananassa HOM05D004000 ORTHO05D004629 8.0e-12 72.8 44 68.2
FAN16G0250 Fragaria x ananassa HOM05D004000 ORTHO05D004629 8.0e-12 72.8 44 68.2
FAN21G3980 Fragaria x ananassa HOM05D004000 ORTHO05D004629 8.0e-12 72.8 44 68.2
FAN25G1212 Fragaria x ananassa HOM05D004000 ORTHO05D004629 8.0e-12 72.8 44 68.2
Manes.17G000700 Manihot esculenta HOM05D004000 ORTHO05D004629 8.0e-12 72.8 43 74.4
Oeu044963.4 Olea europaea HOM05D004000 ORTHO05D004629 8.0e-12 72.8 45 68.9
RcHm_v2.0_Chr5g0024051 Rosa chinensis HOM05D004000 ORTHO05D004629 8.0e-12 72.8 44 68.2
MSTRG.13084 Avicennia marina HOM05D004000 ORTHO05D004629 1.0e-11 72.4 45 71.1
Migut.H01660 Erythranthe guttata HOM05D004000 ORTHO05D004629 1.0e-11 72.4 45 68.9
Gohir.D08G252100 Gossypium hirsutum HOM05D004000 ORTHO05D004629 1.0e-11 72.4 44 70.5
Gorai.004G268800 Gossypium raimondii HOM05D004000 ORTHO05D004629 1.0e-11 72.4 44 70.5
Lalb_Chr01g0015521 Lupinus albus HOM05D004000 ORTHO05D004629 1.0e-11 72.4 46 69.6
Nn7g36133 Nelumbo nucifera HOM05D004000 ORTHO05D004629 1.0e-11 72.4 48 70.8
Sed0027383 Sechium edule HOM05D004000 ORTHO05D004629 1.0e-11 72.4 43 72.1
PSO384G1790 Papaver somniferum HOM05D004000 ORTHO05D004629 1.4e-11 72.0 45 64.4
Pp3c10_17770 Physcomitrium patens HOM05D004000 ORTHO05D004629 1.4e-11 72.0 43 69.8
SGA_v2.0_scaffold239G44016 Striga asiatica HOM05D004000 ORTHO05D004629 1.4e-11 72.0 45 66.7
TAR627G0690 Trochodendron aralioides HOM05D004000 ORTHO05D004629 1.4e-11 72.0 44 72.7
Os06g0233400 Oryza sativa ssp. japonica HOM05D004000 ORTHO05D004629 1.8e-11 71.6 44 65.9
SEGI_20471 Sequoiadendron giganteum HOM05D004000 ORTHO05D004629 1.8e-11 71.6 45 64.4
Aqoxy2G00201 Aquilegia oxysepala HOM05D004000 ORTHO05D004629 2.3e-11 71.2 45 64.4
CiPaw.11G059500 Carya illinoinensis HOM05D004000 ORTHO05D004629 2.3e-11 71.2 44 70.5
MD10G1211100 Malus domestica HOM05D004000 ORTHO05D004629 2.3e-11 71.2 45 66.7
SalBow1G7638 Salvia bowleyana HOM05D004000 ORTHO05D004629 2.3e-11 71.2 45 68.9
THA.LOC104816986 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 2.3e-11 71.2 45 64.4
DCAR_016849 Daucus carota HOM05D004000 ORTHO05D004629 3.0e-11 70.9 45 64.4
Gohir.A04G050700 Gossypium hirsutum HOM05D004000 ORTHO05D004629 4.0e-11 70.5 42 71.4
Duzib268G1547 Durio zibethinus HOM05D004000 ORTHO05D004629 5.2e-11 70.1 43 69.8
HanXRQChr13g0408851 Helianthus annuus HOM05D004000 ORTHO05D004629 5.2e-11 70.1 45 66.7
Glyma.08G164900 Glycine max HOM05D004000 ORTHO05D004629 6.8e-11 69.7 44 65.9
Glyma.15G262200 Glycine max HOM05D004000 ORTHO05D004629 6.8e-11 69.7 44 65.9
Hund12026 Selenicereus undatus HOM05D004000 ORTHO05D004629 6.8e-11 69.7 45 64.4
MSTRG.14568 Avicennia marina HOM05D004000 ORTHO05D004629 8.8e-11 69.3 45 66.7
Lalb_Chr20g0108471 Lupinus albus HOM05D004000 ORTHO05D004629 8.8e-11 69.3 46 63.0
Phvul.005G049350 Phaseolus vulgaris HOM05D004000 ORTHO05D004629 8.8e-11 69.3 44 63.6
Pp3c3_33500 Physcomitrium patens HOM05D004000 ORTHO05D004629 8.8e-11 69.3 43 69.8
VMungo1080G1629 Vigna mungo HOM05D004000 ORTHO05D004629 8.8e-11 69.3 44 63.6
Zm00001eb194650 Zea mays HOM05D004000 ORTHO05D004629 8.8e-11 69.3 42 66.7
Mapoly0065s0055 Marchantia polymorpha HOM05D004000 ORTHO05D004629 1.2e-10 68.9 37 78.4
Lj3g0014191 Lotus japonicus HOM05D004000 ORTHO05D004629 1.5e-10 68.6 44 65.9
arahy.Tifrunner.gnm1.ann1.U2QCB7 Arachis hypogaea HOM05D004000 ORTHO05D004629 2.0e-10 68.2 44 63.6
arahy.Tifrunner.gnm1.ann1.UQZ7YG Arachis hypogaea HOM05D004000 ORTHO05D004629 2.0e-10 68.2 44 63.6
ECA240G0236 Erigeron canadensis HOM05D004000 ORTHO05D004629 3.4e-10 67.4 45 62.2
Medtr2g064415 Medicago truncatula HOM05D004000 ORTHO05D004629 4.4e-10 67.0 42 66.7
SMO364G0004 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 4.4e-10 67.0 39 66.7
CAN.G321.32 Capsicum annuum HOM05D004000 ORTHO05D004629 5.7e-10 66.6 39 71.8
Ca_03197_v3 Cicer arietinum L. HOM05D004000 ORTHO05D004629 5.7e-10 66.6 44 61.4
Psat0s1441g0160 Pisum sativum HOM05D004000 ORTHO05D004629 9.8e-10 65.9 42 64.3
unitig_61.g26121 Utricularia gibba HOM05D004000 ORTHO05D004629 9.8e-10 65.9 37 73.0
Nitab4.5_0002597g0020 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.3e-09 65.5 40 70.0
Ah.01g015680 Amaranthus hybridus HOM05D004000 ORTHO05D004629 1.7e-09 65.1 46 60.9
CBR_g22391 Chara braunii HOM05D004000 ORTHO05D004629 1.7e-09 65.1 37 70.3
Peaxi162Scf00006g01617 Petunia axillaris HOM05D004000 ORTHO05D004629 1.7e-09 65.1 45 62.2
FAN23G0482 Fragaria x ananassa HOM05D000049 ORTHO05D004629 2.2e-09 64.7 44 59.1
Solyc12g017310.3 Solanum lycopersicum HOM05D004000 ORTHO05D004629 2.8e-09 64.3 45 62.2
Sopen12g008120 Solanum pennellii HOM05D004000 ORTHO05D004629 3.7e-09 63.9 45 62.2
Nitab4.5_0000388g0080 Nicotiana tabacum HOM05D004000 ORTHO05D004629 6.3e-09 63.2 39 69.2
PGSC0003DMG400009664 Solanum tuberosum HOM05D004000 ORTHO05D004629 6.3e-09 63.2 45 60.0
FAN19G2643 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.1e-08 62.4 44 56.8
SMO356G0101 Selaginella moellendorffii HOM05D004994 ORTHO05D006359 1.1e-08 62.4 41 63.4
SMO198G0075 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 1.4e-08 62.0 36 69.4
CAN.G106.17 Capsicum annuum HOM05D004000 ORTHO05D000001 2.4e-08 61.2 44 63.6
Pp3c16_19930 Physcomitrium patens HOM05D004994 ORTHO05D006359 2.4e-08 61.2 41 61.0
RcHm_v2.0_Chr2g0106621 Rosa chinensis HOM05D004000 ORTHO05D004629 4.1e-08 60.5 44 56.8
CBR_g12339 Chara braunii HOM05D004994 ORTHO05D006359 5.4e-08 60.1 38 63.2
FAN26G0293 Fragaria x ananassa HOM05D004000 ORTHO05D004629 5.4e-08 60.1 44 54.5
Pp3c6_28870 Physcomitrium patens HOM05D004994 ORTHO05D006359 5.4e-08 60.1 41 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3570 Anthoceros agrestis HOM05D004994 ORTHO05D006359 1.2e-07 58.9 41 61.0
FvH4_1g16700 Fragaria vesca HOM05D000049 ORTHO05D004629 1.2e-07 58.9 40 60.0
FAN28G0737 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.2e-07 58.9 44 54.5
Mapoly0052s0047 Marchantia polymorpha HOM05D004994 ORTHO05D006359 1.2e-07 58.9 41 58.5
SMO340G0063 Selaginella moellendorffii HOM05D004994 ORTHO05D006359 1.2e-07 58.9 38 63.2
SMO356G0302 Selaginella moellendorffii HOM05D004994 ORTHO05D006359 1.2e-07 58.9 38 63.2
FAN28G2261 Fragaria x ananassa HOM05D004000 ORTHO05D004629 5.9e-07 56.6 44 52.3
SMO057G0003 Selaginella moellendorffii HOM05D004994 ORTHO05D006359 7.7e-07 56.2 38 60.5
Cre01.g014850 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 1.0e-06 55.8 43 48.8
PRCOL_00005347 Prasinoderma coloniale HOM05D004000 ORTHO05D004629 1.7e-06 55.1 40 57.5
HanXRQChr09g0265211 Helianthus annuus HOM05D004994 ORTHO05D006359 2.2e-06 54.7 41 56.1
unitig_21.g20929 Utricularia gibba HOM05D004994 ORTHO05D006359 2.2e-06 54.7 38 60.5
MSTRG.3242 Avicennia marina HOM05D004994 ORTHO05D006359 3.8e-06 53.9 38 57.9
ClCG09G018190 Citrullus lanatus HOM05D004994 ORTHO05D006359 3.8e-06 53.9 41 53.7
MELO3C021990.2 Cucumis melo HOM05D004994 ORTHO05D006359 3.8e-06 53.9 41 53.7
CsaV3_5G038070 Cucumis sativus L. HOM05D004994 ORTHO05D006359 3.8e-06 53.9 41 53.7
BcaC06g33661 Brassica carinata HOM05D004994 ORTHO05D006359 5.0e-06 53.5 38 57.9
A06p40210 Brassica napus HOM05D004994 ORTHO05D006359 5.0e-06 53.5 38 57.9
C07p37900 Brassica napus HOM05D004994 ORTHO05D006359 5.0e-06 53.5 38 57.9
BolC7t44311H Brassica oleracea HOM05D004994 ORTHO05D006359 5.0e-06 53.5 38 57.9
BraA06t26936Z Brassica rapa HOM05D004994 ORTHO05D006359 5.0e-06 53.5 38 57.9
CDE04G1098 Ceratophyllum demersum HOM05D004994 ORTHO05D006359 5.0e-06 53.5 38 52.6
PRCOL_00003335 Prasinoderma coloniale HOM05D004994 ORTHO05D006359 5.0e-06 53.5 40 57.5
SalBow1G0614 Salvia bowleyana HOM05D004994 ORTHO05D006359 5.0e-06 53.5 38 57.9
SalBow1G7872 Salvia bowleyana HOM05D004994 ORTHO05D006359 5.0e-06 53.5 38 57.9
CiPaw.03G025700 Carya illinoinensis HOM05D004994 ORTHO05D006359 6.5e-06 53.1 38 57.9
DCAR_011091 Daucus carota HOM05D004994 ORTHO05D006359 6.5e-06 53.1 38 57.9
Actinidia17553 Actinidia chinensis HOM05D004994 ORTHO05D006359 8.5e-06 52.8 38 57.9
Aa31LG2G4200 Aethionema arabicum HOM05D004994 ORTHO05D006359 8.5e-06 52.8 38 55.3
CDE07G1068 Ceratophyllum demersum HOM05D004994 ORTHO05D006359 8.5e-06 52.8 38 52.6
Lsat_1_v5_gn_3_100161 Lactuca sativa HOM05D004994 ORTHO05D006359 8.5e-06 52.8 38 57.9
MBI02_g15397_MAGBIO Magnolia biondii HOM05D004994 ORTHO05D006359 8.5e-06 52.8 38 55.3
SGA_v2.0_scaffold90G27627 Striga asiatica HOM05D004994 ORTHO05D006359 8.5e-06 52.8 38 57.9
THA.LOC104805471 Tarenaya hassleriana HOM05D004994 ORTHO05D006359 8.5e-06 52.8 38 57.9


User provided reference genes

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