Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 3.1e-136 488.4 242 100.0
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 3.1e-136 488.4 242 100.0
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.5e-133 478.8 242 97.5
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.5e-133 478.8 242 97.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 3.2e-133 478.4 241 97.5
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 3.6e-124 448.4 245 91.0
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 4.9e-121 438.0 245 88.6
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 5.8e-114 414.5 246 83.3
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 2.7e-111 405.6 246 81.3
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 4.6e-111 404.8 243 82.3
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.3e-110 402.5 245 81.2
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 4.0e-107 391.7 245 79.6
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 7.6e-98 360.9 245 72.7
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.6e-92 343.2 185 87.6
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 8.4e-89 330.9 250 65.6
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 4.2e-88 328.6 245 65.7
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 4.2e-88 328.6 245 65.7
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 7.8e-87 324.3 246 65.4
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.9e-85 319.7 242 65.7
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 3.3e-85 318.9 210 71.4
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 3.3e-85 318.9 247 63.2
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 1.6e-84 316.6 245 63.7
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.6e-84 316.6 241 63.9
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.6e-84 316.6 252 63.9
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 2.8e-84 315.8 243 63.4
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 3.6e-84 315.5 242 64.0
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 3.6e-84 315.5 246 62.6
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.2e-84 314.7 245 63.3
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 8.1e-84 314.3 242 63.6
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.4e-83 313.5 245 62.9
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.3e-83 311.6 247 60.7
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 5.3e-83 311.6 249 63.5
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.9e-83 311.2 241 62.7
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 9.0e-83 310.8 241 61.8
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.5e-82 310.1 242 62.8
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 2.0e-82 309.7 245 62.0
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.6e-82 309.3 242 62.0
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.6e-82 309.3 247 60.7
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 7.6e-82 307.8 239 63.2
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 9.9e-82 307.4 248 62.1
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 9.9e-82 307.4 190 72.6
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 9.9e-82 307.4 246 61.0
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.2e-81 306.2 242 62.8
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.9e-81 305.8 248 61.7
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 2.9e-81 305.8 249 60.6
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 2.9e-81 305.8 251 62.9
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 6.4e-81 304.7 248 61.3
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 6.4e-81 304.7 249 60.2
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 8.4e-81 304.3 248 59.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 1.1e-80 303.9 245 59.6
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.4e-80 303.5 246 60.2
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 1.9e-80 303.1 224 67.0
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 1.9e-80 303.1 255 60.0
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 1.9e-80 303.1 251 61.0
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 4.2e-80 302.0 250 59.2
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 5.4e-80 301.6 243 63.0
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 5.4e-80 301.6 250 62.4
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 5.4e-80 301.6 249 62.7
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.6e-79 300.1 249 61.0
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.6e-79 300.1 241 59.3
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.1e-79 299.7 249 61.4
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.1e-79 299.7 248 60.1
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 2.7e-79 299.3 237 62.9
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 3.5e-79 298.9 242 59.5
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 3.5e-79 298.9 221 64.3
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 3.5e-79 298.9 241 58.9
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 3.9e-78 295.4 221 65.6
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 6.6e-78 294.7 253 68.8
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 1.5e-77 293.5 237 61.6
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.9e-77 293.1 254 58.7
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 3.3e-77 292.4 254 58.7
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 9.6e-77 290.8 216 66.2
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.3e-76 290.4 244 58.2
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.6e-76 290.0 243 61.7
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 4.8e-76 288.5 253 58.5
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 4.8e-76 288.5 209 66.5
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 4.8e-76 288.5 247 59.1
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 6.2e-76 288.1 250 57.2
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 1.1e-75 287.3 252 56.0
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.8e-75 286.6 216 64.4
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.4e-75 286.2 210 66.2
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 3.1e-75 285.8 185 69.7
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 3.1e-75 285.8 209 63.6
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 5.3e-75 285.0 247 59.1
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 9.0e-75 284.3 228 59.6
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.5e-74 283.5 248 59.3
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 2.0e-74 283.1 248 59.3
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.6e-74 282.7 210 65.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.6e-74 282.7 215 64.2
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 2.9e-73 279.3 205 64.9
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.9e-73 279.3 247 57.5
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.8e-73 278.9 247 57.5
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 8.4e-73 277.7 230 63.0
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 8.4e-73 277.7 224 59.8
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 9.3e-72 274.2 190 66.8
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.2e-71 273.9 262 55.3
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 2.3e-70 269.6 190 65.8
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 2.3e-70 269.6 185 65.9
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.0e-70 269.2 196 64.3
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 3.0e-70 269.2 189 64.6
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 8.7e-70 267.7 192 64.6
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 2.5e-69 266.2 169 72.2
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 9.6e-69 264.2 247 55.9
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 2.1e-68 263.1 241 54.8
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 2.1e-68 263.1 194 62.4
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.3e-65 253.8 172 68.0
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 1.7e-65 253.4 257 52.5
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.4e-59 233.0 152 71.7
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 2.1e-55 219.9 151 66.9
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 2.7e-55 219.5 194 58.2
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.6e-52 210.3 151 66.2
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 2.1e-47 193.4 126 68.3
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.8e-44 183.0 119 71.4
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.2e-42 177.6 170 48.8
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 1.5e-42 177.2 211 43.1
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 2.9e-41 172.9 171 48.5
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 5.0e-41 172.2 172 48.8
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 8.5e-41 171.4 148 60.1
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 3.6e-39 166.0 119 66.4
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.1e-37 161.0 174 43.7
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 5.3e-35 152.1 87 83.9
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 7.7e-34 148.3 101 65.3
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.0e-33 147.9 101 64.4
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 1.3e-33 147.5 80 88.8
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 6.5e-33 145.2 80 88.8
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 5.2e-30 135.6 131 52.7
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.9e-24 117.1 71 80.3
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 1.8e-22 110.5 143 38.5
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.5e-18 95.9 84 58.3
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 4.4e-13 79.3 195 29.7
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 3.7e-12 76.3 54 57.4
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 4.5e-10 69.3 52 63.5
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.3e-08 63.2 37 70.3
PRCOL_00000045 Prasinoderma coloniale HOM05D005379 ORTHO05D006661 9.5e-08 61.6 140 30.0
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 2.8e-07 60.1 47 55.3
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.4e-06 57.8 37 59.5


User provided reference genes

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