Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p07890 Brassica napus HOM05D004900 ORTHO05D027847 3.8e-57 224.6 108 100.0
BraSC35t46009Z Brassica rapa HOM05D004900 ORTHO05D027847 1.1e-56 223.0 107 100.0
C03p59820 Brassica napus HOM05D004900 ORTHO05D027847 2.4e-27 125.6 89 73.0
BolC3t18246H Brassica oleracea HOM05D004900 ORTHO05D027847 1.5e-26 122.9 66 89.4
CARHR105960 Cardamine hirsuta HOM05D004900 ORTHO05D006392 1.5e-13 79.7 61 70.5
Aa31LG8G13280 Aethionema arabicum HOM05D004900 ORTHO05D006392 3.3e-13 78.6 63 66.7
AT2G15620 Arabidopsis thaliana HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
BcaB07g31785 Brassica carinata HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
BcaC04g23041 Brassica carinata HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
BcaC04g23043 Brassica carinata HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
BcaC06g36073 Brassica carinata HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
A07p05130 Brassica napus HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
A09p10810 Brassica napus HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
C07p08190 Brassica napus HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
C09p12780 Brassica napus HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
BolC7t41235H Brassica oleracea HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
BolC9t54165H Brassica oleracea HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
BraA07t28307Z Brassica rapa HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
BraA09t36723Z Brassica rapa HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
Carub.0003s2939 Capsella rubella HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
Thhalv10022613m.g Eutrema salsugineum HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
Sp3g28890 Schrenkiella parvula HOM05D004900 ORTHO05D006392 3.3e-13 78.6 61 68.9
AL3G47370 Arabidopsis lyrata HOM05D004900 ORTHO05D006392 4.4e-13 78.2 61 68.9
THA.LOC104807271 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 5.7e-13 77.8 61 68.9
Dinv42160 Davidia involucrata HOM05D004900 ORTHO05D006392 7.4e-13 77.4 61 67.2
THA.LOC104819578 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 9.7e-13 77.0 61 67.2
Actinidia00438 Actinidia chinensis HOM05D004900 ORTHO05D006392 1.7e-12 76.3 61 65.6
Prupe.8G126000 Prunus persica HOM05D004900 ORTHO05D006392 1.7e-12 76.3 61 65.6
Cfa004525 Carpinus fangiana HOM05D004900 ORTHO05D006392 2.2e-12 75.9 61 65.6
CiPaw.06G172200 Carya illinoinensis HOM05D004900 ORTHO05D006392 2.2e-12 75.9 61 65.6
Migut.B00351 Erythranthe guttata HOM05D004900 ORTHO05D006392 2.2e-12 75.9 60 66.7
Lj4g0002152 Lotus japonicus HOM05D004900 ORTHO05D006392 2.2e-12 75.9 61 65.6
Lalb_Chr05g0219191 Lupinus albus HOM05D004900 ORTHO05D006392 2.2e-12 75.9 61 65.6
Psat7g123960 Pisum sativum HOM05D004900 ORTHO05D006392 2.2e-12 75.9 61 65.6
VMungo0251G0630 Vigna mungo HOM05D004900 ORTHO05D006392 2.2e-12 75.9 61 65.6
Eucgr.I01148 Eucalyptus grandis HOM05D004900 ORTHO05D006392 2.8e-12 75.5 61 65.6
Manes.10G071700 Manihot esculenta HOM05D004900 ORTHO05D006392 2.8e-12 75.5 61 65.6
Medtr4g086020 Medicago truncatula HOM05D004900 ORTHO05D006392 2.8e-12 75.5 61 65.6
Oeu009747.1 Olea europaea HOM05D004900 ORTHO05D006392 2.8e-12 75.5 60 66.7
CAN.G1041.10 Capsicum annuum HOM05D004900 ORTHO05D006392 3.7e-12 75.1 61 63.9
Ciclev10028067m.g Citrus clementina HOM05D004900 ORTHO05D006392 3.7e-12 75.1 61 65.6
CANSAT25G2295 Cannabis sativa HOM05D004900 ORTHO05D006392 4.8e-12 74.7 61 63.9
Phvul.003G292100 Phaseolus vulgaris HOM05D004900 ORTHO05D006392 4.8e-12 74.7 61 63.9
Potri.004G140800 Populus trichocarpa HOM05D004900 ORTHO05D006392 4.8e-12 74.7 61 63.9
Rhsim11G0165400 Rhododendron simsii HOM05D004900 ORTHO05D006392 4.8e-12 74.7 61 63.9
PGSC0003DMG400008262 Solanum tuberosum HOM05D004900 ORTHO05D006392 4.8e-12 74.7 60 65.0
CAN.G663.4 Capsicum annuum HOM05D004900 ORTHO05D006392 6.3e-12 74.3 60 65.0
AUR62029383 Chenopodium quinoa HOM05D004900 ORTHO05D006392 6.3e-12 74.3 60 65.0
AUR62034289 Chenopodium quinoa HOM05D004900 ORTHO05D006392 6.3e-12 74.3 60 65.0
Glyma.02G132100 Glycine max HOM05D004900 ORTHO05D006392 6.3e-12 74.3 60 65.0
Glyma.07G212800 Glycine max HOM05D004900 ORTHO05D006392 6.3e-12 74.3 60 65.0
Nitab4.5_0005249g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 6.3e-12 74.3 61 63.9
Nitab4.5_0018347g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 6.3e-12 74.3 61 63.9
Solyc01g108630.3 Solanum lycopersicum HOM05D004900 ORTHO05D006392 6.3e-12 74.3 60 65.0
Sopen01g050850 Solanum pennellii HOM05D004900 ORTHO05D006392 6.3e-12 74.3 60 65.0
PGSC0003DMG400025823 Solanum tuberosum HOM05D004900 ORTHO05D006392 6.3e-12 74.3 60 65.0
TPR.G25435 Trifolium pratense HOM05D004900 ORTHO05D006392 6.3e-12 74.3 61 63.9
Gohir.A13G040600 Gossypium hirsutum HOM05D004900 ORTHO05D006392 8.2e-12 73.9 60 63.3
Peaxi162Scf00016g01734 Petunia axillaris HOM05D004900 ORTHO05D006392 8.2e-12 73.9 65 60.0
Sed0000080 Sechium edule HOM05D004900 ORTHO05D006392 8.2e-12 73.9 61 63.9
arahy.Tifrunner.gnm1.ann1.AXQD4Y Arachis hypogaea HOM05D004900 ORTHO05D006392 1.1e-11 73.6 61 63.9
arahy.Tifrunner.gnm1.ann1.X7K798 Arachis hypogaea HOM05D004900 ORTHO05D006392 1.1e-11 73.6 61 63.9
COL.COLO4_32650 Corchorus olitorius HOM05D004900 ORTHO05D006392 1.1e-11 73.6 60 63.3
Ah.06g184040 Amaranthus hybridus HOM05D004900 ORTHO05D006392 1.4e-11 73.2 65 60.0
MSTRG.16738 Avicennia marina HOM05D004900 ORTHO05D006392 1.4e-11 73.2 60 63.3
Hma1.2p1_0370F.1_g137745 Hydrangea macrophylla HOM05D004900 ORTHO05D006392 1.4e-11 73.2 60 63.3
Nitab4.5_0000876g0100 Nicotiana tabacum HOM05D004900 ORTHO05D006392 1.4e-11 73.2 60 63.3
EL10Ac4g08164 Beta vulgaris HOM05D004900 ORTHO05D006392 1.8e-11 72.8 60 63.3
Cc02_g28520 Coffea canephora HOM05D004900 ORTHO05D006392 1.8e-11 72.8 60 63.3
Gohir.D13G039300 Gossypium hirsutum HOM05D004900 ORTHO05D006392 1.8e-11 72.8 60 63.3
Gorai.013G044200 Gossypium raimondii HOM05D004900 ORTHO05D006392 1.8e-11 72.8 60 63.3
Lj5A209T83 Lonicera japonica HOM05D004900 ORTHO05D006392 1.8e-11 72.8 60 63.3
QL11p035712 Quercus lobata HOM05D004900 ORTHO05D006392 1.8e-11 72.8 61 62.3
Sabra04G0092700 Salix brachista HOM05D004900 ORTHO05D006392 1.8e-11 72.8 61 62.3
Ca_18688_v3 Cicer arietinum L. HOM05D004900 ORTHO05D006392 2.4e-11 72.4 61 62.3
Sopen10g022530 Solanum pennellii HOM05D004900 ORTHO05D006392 2.4e-11 72.4 60 63.3
TWI31G0729 Tripterygium wilfordii HOM05D004900 ORTHO05D006392 2.4e-11 72.4 60 63.3
Duzib248G0136 Durio zibethinus HOM05D004900 ORTHO05D006392 3.1e-11 72.0 60 63.3
MD05G1081500 Malus domestica HOM05D004900 ORTHO05D006392 3.1e-11 72.0 61 63.9
Peaxi162Scf00003g01630 Petunia axillaris HOM05D004900 ORTHO05D006392 3.1e-11 72.0 60 63.3
SGA_v2.0_scaffold90G27642 Striga asiatica HOM05D004900 ORTHO05D006392 4.1e-11 71.6 60 60.0
unitig_0.g85 Utricularia gibba HOM05D004900 ORTHO05D006392 4.1e-11 71.6 60 63.3
CAN.G149.20 Capsicum annuum HOM05D004900 ORTHO05D006392 5.3e-11 71.2 60 63.3
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 5.3e-11 71.2 60 63.3
FvH4_2g05960 Fragaria vesca HOM05D004900 ORTHO05D006392 5.3e-11 71.2 61 62.3
FAN24G3555 Fragaria x ananassa HOM05D004900 ORTHO05D006392 5.3e-11 71.2 61 62.3
Sabra09G0077500 Salix brachista HOM05D004900 ORTHO05D006392 5.3e-11 71.2 61 63.9
CSS0038145 Camellia sinensis var. sinensis HOM05D004900 ORTHO05D006392 7.0e-11 70.9 60 60.0
Cpa.g.sc62.8 Carica papaya HOM05D004900 ORTHO05D006392 7.0e-11 70.9 60 61.7
ClCG05G009960 Citrullus lanatus HOM05D004900 ORTHO05D006392 7.0e-11 70.9 61 62.3
MELO3C019505.2 Cucumis melo HOM05D004900 ORTHO05D006392 7.0e-11 70.9 61 62.3
DCAR_029058 Daucus carota HOM05D004900 ORTHO05D006392 7.0e-11 70.9 60 61.7
RcHm_v2.0_Chr6g0257431 Rosa chinensis HOM05D004900 ORTHO05D006392 7.0e-11 70.9 61 62.3
Solyc10g050890.2 Solanum lycopersicum HOM05D004900 ORTHO05D006392 7.0e-11 70.9 60 61.7
GSVIVG01031737001 Vitis vinifera HOM05D004900 ORTHO05D006392 9.1e-11 70.5 61 59.0
vmacro02045 Vaccinium macrocarpon HOM05D004900 ORTHO05D006392 1.2e-10 70.1 61 60.7
Ah.04g164910 Amaranthus hybridus HOM05D004900 ORTHO05D006392 1.6e-10 69.7 60 61.7
Hund22922 Selenicereus undatus HOM05D004900 ORTHO05D006392 2.0e-10 69.3 60 61.7
Thecc.02G101200 Theobroma cacao HOM05D004900 ORTHO05D006392 2.0e-10 69.3 60 61.7
TAR628G1452 Trochodendron aralioides HOM05D004900 ORTHO05D006392 2.0e-10 69.3 61 59.0
Atru.chr5.2694 Acer truncatum HOM05D004900 ORTHO05D006392 2.6e-10 68.9 61 60.7
PSO170G4054 Papaver somniferum HOM05D004900 ORTHO05D006392 2.6e-10 68.9 60 60.0
PSO210G5341 Papaver somniferum HOM05D004900 ORTHO05D006392 2.6e-10 68.9 60 60.0
HanXRQChr09g0259251 Helianthus annuus HOM05D004900 ORTHO05D006392 3.5e-10 68.6 60 60.0
Lsat_1_v5_gn_7_86981 Lactuca sativa HOM05D004900 ORTHO05D006392 3.5e-10 68.6 60 61.7
FAN27G2168 Fragaria x ananassa HOM05D004900 ORTHO05D006392 4.5e-10 68.2 61 59.0
PGR142G1087 Punica granatum HOM05D004900 ORTHO05D006392 4.5e-10 68.2 60 60.0
Aqoxy6G01317 Aquilegia oxysepala HOM05D004900 ORTHO05D006392 7.7e-10 67.4 60 58.3
SEGI_39412 Sequoiadendron giganteum HOM05D004900 ORTHO05D006392 7.7e-10 67.4 60 60.0
CsaV3_3G018610 Cucumis sativus L. HOM05D004900 ORTHO05D006392 1.0e-09 67.0 61 57.4
Sc18g0004090 Simmondsia chinensis HOM05D004900 ORTHO05D006392 2.2e-09 65.9 60 58.3
HanXRQChr04g0128191 Helianthus annuus HOM05D004900 ORTHO05D006392 2.9e-09 65.5 60 58.3
Os02g0765900 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 3.8e-09 65.1 60 58.3
Zm00001eb193660 Zea mays HOM05D004900 ORTHO05D006392 6.5e-09 64.3 60 58.3
Zm00001eb255880 Zea mays HOM05D004900 ORTHO05D006392 6.5e-09 64.3 60 58.3
Hund02212 Selenicereus undatus HOM05D004900 ORTHO05D006392 8.5e-09 63.9 60 56.7
Os01g0357100 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 1.1e-08 63.5 60 56.7
CDE09G0425 Ceratophyllum demersum HOM05D004900 ORTHO05D006392 1.5e-08 63.2 60 53.3
AagrBONN_evm.TU.Sc2ySwM_117.307 Anthoceros agrestis HOM05D004900 ORTHO05D006392 1.9e-08 62.8 60 56.7
AagrBONN_evm.TU.Sc2ySwM_117.432 Anthoceros agrestis HOM05D004900 ORTHO05D006392 1.9e-08 62.8 60 56.7
ATR0009G021 Amborella trichopoda HOM05D004900 ORTHO05D006392 2.5e-08 62.4 60 53.3
MBI03_g13466_MAGBIO Magnolia biondii HOM05D004900 ORTHO05D006392 2.5e-08 62.4 60 56.7
Nn1g04853 Nelumbo nucifera HOM05D004900 ORTHO05D006392 9.4e-08 60.5 60 53.3
HPP92_004223 Vanilla planifolia HOM05D004900 ORTHO05D006392 1.6e-07 59.7 63 49.2
HPP92_004227 Vanilla planifolia HOM05D004900 ORTHO05D006392 1.6e-07 59.7 63 49.2
SMO200G0071 Selaginella moellendorffii HOM05D004900 ORTHO05D006392 2.7e-07 58.9 60 53.3
Pp3c27_6610 Physcomitrium patens HOM05D004900 ORTHO05D006392 4.7e-07 58.2 60 51.7
Mapoly0183s0004 Marchantia polymorpha HOM05D004900 ORTHO05D006392 6.1e-07 57.8 60 50.0
Pp3c16_15880 Physcomitrium patens HOM05D004900 ORTHO05D006392 8.0e-07 57.4 60 48.3
TAR628G1596 Trochodendron aralioides HOM05D004900 ORTHO05D006392 1.4e-06 56.6 58 53.4


User provided reference genes

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