Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.2e-167 593.2 310 100.0
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.2e-167 593.2 310 100.0
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 2.6e-159 565.5 309 95.5
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 5.8e-159 564.3 310 95.8
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 9.2e-157 557.0 309 95.1
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 4.4e-143 511.5 308 87.7
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 5.8e-143 511.1 308 87.7
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 3.8e-142 508.4 308 87.0
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 4.6e-140 501.5 308 85.7
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 4.6e-140 501.5 308 85.7
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 4.6e-140 501.5 308 85.7
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.7e-139 499.6 309 86.1
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 5.6e-138 494.6 309 84.8
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 5.8e-135 484.6 309 83.8
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.1e-133 480.3 308 83.1
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 2.4e-133 479.2 310 82.9
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.3e-131 472.6 308 81.8
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 4.5e-127 458.4 310 80.0
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 3.7e-121 438.7 317 73.2
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 3.2e-117 425.6 311 75.6
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 3.9e-99 365.5 322 62.4
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.9e-98 363.2 310 64.5
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.4e-96 356.3 322 61.2
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 6.9e-96 354.8 323 62.5
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.2e-95 354.0 325 60.9
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 2.6e-95 352.8 320 61.2
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 5.9e-95 351.7 322 61.5
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 7.7e-95 351.3 321 60.1
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.3e-94 350.5 325 60.9
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.0e-94 348.6 321 58.9
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 8.5e-94 347.8 321 58.6
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.9e-93 346.7 320 59.7
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 2.5e-93 346.3 322 58.1
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 3.2e-93 345.9 321 58.9
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 7.2e-93 344.7 336 58.0
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.1e-92 343.2 318 59.7
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 2.1e-92 343.2 324 61.4
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 2.7e-92 342.8 320 59.7
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 6.1e-92 341.7 321 57.9
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 7.9e-92 341.3 327 58.7
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 2.3e-91 339.7 311 61.1
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.0e-91 339.3 326 58.6
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 3.0e-91 339.3 325 59.1
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 3.0e-91 339.3 322 59.6
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 3.0e-91 339.3 313 60.7
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 6.7e-91 338.2 323 58.8
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 6.7e-91 338.2 322 57.8
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 8.8e-91 337.8 320 57.2
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 8.8e-91 337.8 315 58.1
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.5e-90 337.0 327 56.9
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 5.7e-90 335.1 317 57.7
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 7.4e-90 334.7 316 59.8
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 9.7e-90 334.3 321 58.6
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 1.3e-89 334.0 325 57.8
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.3e-89 334.0 329 58.7
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 3.7e-89 332.4 326 57.7
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 8.2e-89 331.3 322 59.3
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 8.2e-89 331.3 320 56.9
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.8e-88 330.1 324 58.3
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 2.4e-88 329.7 322 58.7
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 4.1e-88 328.9 320 57.2
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.2e-87 327.4 314 60.8
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.2e-87 327.4 332 55.7
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 3.4e-87 325.9 317 56.5
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 4.5e-87 325.5 309 59.5
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 5.9e-87 325.1 335 56.1
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 5.9e-87 325.1 328 56.7
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 5.9e-87 325.1 323 58.8
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.0e-86 324.3 380 51.8
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 1.3e-86 323.9 317 57.1
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 6.5e-86 321.6 308 58.8
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 8.5e-86 321.2 312 56.1
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 1.1e-85 320.9 318 57.5
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.1e-85 320.9 341 54.8
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 4.2e-85 318.9 320 56.2
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.2e-85 318.9 320 56.2
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 2.1e-84 316.6 322 55.9
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 2.1e-84 316.6 364 52.5
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 6.1e-84 315.1 322 55.3
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 6.1e-84 315.1 309 57.6
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.0e-83 314.3 330 53.9
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 1.0e-83 314.3 322 55.3
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 3.0e-83 312.8 329 55.3
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 3.0e-83 312.8 313 55.9
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 8.8e-83 311.2 324 54.6
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 3.3e-82 309.3 301 58.8
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 7.4e-82 308.1 320 54.7
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.7e-81 307.0 308 54.9
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 6.3e-81 305.1 324 54.0
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 3.1e-80 302.8 317 53.0
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.2e-79 300.8 317 54.3
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.2e-79 300.8 268 61.6
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 1.6e-79 300.4 341 51.6
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 2.0e-79 300.1 371 48.5
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 2.2e-78 296.6 377 49.6
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.8e-78 295.8 324 54.6
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 1.9e-77 293.5 301 56.5
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 4.0e-75 285.8 320 53.1
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 6.7e-75 285.0 330 51.8
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 2.0e-74 283.5 315 53.3
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 7.5e-74 281.6 311 53.1
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.3e-73 280.8 312 51.3
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.7e-73 280.4 317 51.7
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 6.5e-70 268.5 253 58.1
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.9e-69 266.9 320 49.4
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.8e-67 260.4 226 63.7
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.1e-64 251.1 299 52.2
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 5.4e-64 248.8 352 46.0
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.3e-62 243.4 312 51.0
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 5.2e-59 232.3 319 47.0
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 2.0e-58 230.3 307 45.3
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 3.4e-58 229.6 298 46.0
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 7.5e-58 228.4 295 47.8
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 9.8e-58 228.0 310 45.5
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 5.9e-55 218.8 272 47.8
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.0e-54 218.0 316 45.6
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 2.1e-44 183.7 321 38.3
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 1.8e-43 180.6 322 39.8
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 3.7e-41 172.9 112 77.7
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 4.7e-36 156.0 177 46.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 1.7e-33 147.5 178 48.9
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.4e-32 143.7 105 66.7
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.1e-31 140.6 264 39.4
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 3.5e-31 139.8 110 65.5
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 1.3e-30 137.9 188 45.2
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 1.7e-30 137.5 135 57.0
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 2.3e-22 110.5 199 44.2
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 6.4e-17 92.4 81 60.5
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 3.9e-14 83.2 337 27.6
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 4.3e-13 79.7 46 78.3
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 4.3e-13 79.7 46 78.3
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 4.3e-13 79.7 46 78.3
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 1.3e-12 78.2 53 69.8
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.8e-12 77.0 67 53.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 6.2e-12 75.9 45 75.6
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 1.4e-11 74.7 107 46.7
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 6.9e-11 72.4 107 48.6
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 1.7e-09 67.8 54 61.1
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.2e-07 61.6 102 41.2
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 4.6e-07 59.7 51 58.8
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 5.1e-06 56.2 53 52.8


User provided reference genes

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