Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.9e-161 572.4 281 100.0
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.8e-122 443.0 256 89.5
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.8e-122 443.0 256 89.5
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.8e-122 443.0 256 89.5
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.8e-122 443.0 256 89.5
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 3.9e-122 441.8 256 89.1
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 8.7e-122 440.7 256 88.7
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 1.5e-121 439.9 262 84.0
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 9.6e-121 437.2 256 87.5
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 3.7e-120 435.3 265 86.4
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.1e-119 433.7 256 87.1
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 5.3e-119 431.4 256 85.5
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.2e-118 430.3 256 86.3
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 1.5e-118 429.9 256 85.2
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 2.0e-118 429.5 256 85.2
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 5.8e-118 427.9 256 84.8
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 3.8e-117 425.2 256 84.4
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 3.7e-112 408.7 256 81.2
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 3.7e-112 408.7 256 81.2
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 8.2e-112 407.5 254 81.5
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 3.1e-111 405.6 257 80.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 3.1e-111 405.6 254 79.9
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 4.1e-111 405.2 254 80.3
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 5.3e-111 404.8 254 79.5
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 5.3e-111 404.8 256 80.9
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 9.0e-111 404.1 254 80.7
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 9.0e-111 404.1 256 80.5
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.2e-110 403.7 256 80.1
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 1.5e-110 403.3 254 79.9
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 2.6e-110 402.5 256 80.1
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 3.4e-110 402.1 254 78.7
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 3.4e-110 402.1 254 80.3
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 4.5e-110 401.7 254 79.9
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 4.5e-110 401.7 254 80.7
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 4.5e-110 401.7 254 80.3
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 5.9e-110 401.4 256 80.1
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 5.9e-110 401.4 254 80.3
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 7.6e-110 401.0 256 80.1
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 7.6e-110 401.0 256 80.1
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.0e-109 400.6 254 79.1
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.0e-109 400.6 253 80.6
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.0e-109 400.6 253 80.6
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.0e-109 400.6 256 79.3
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.3e-109 400.2 254 80.3
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.3e-109 400.2 255 79.6
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.7e-109 399.8 254 79.5
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 2.2e-109 399.4 254 79.9
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 2.2e-109 399.4 254 80.3
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.9e-109 399.1 254 79.5
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 2.9e-109 399.1 254 79.9
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 2.9e-109 399.1 254 79.5
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.8e-109 398.7 254 79.5
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.8e-109 398.7 253 80.2
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 3.8e-109 398.7 254 80.3
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 3.8e-109 398.7 254 79.5
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 5.0e-109 398.3 255 79.2
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 5.0e-109 398.3 254 80.3
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 5.0e-109 398.3 254 79.5
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 5.0e-109 398.3 254 79.5
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 6.5e-109 397.9 254 79.5
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 6.5e-109 397.9 254 79.1
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 8.5e-109 397.5 255 78.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 8.5e-109 397.5 256 78.9
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.4e-108 396.7 254 79.9
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.9e-108 396.4 254 78.7
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.5e-108 396.0 256 78.5
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.2e-108 395.6 256 78.1
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.2e-108 395.2 254 78.3
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 4.2e-108 395.2 254 78.7
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 9.3e-108 394.0 254 78.3
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 9.3e-108 394.0 254 78.0
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.2e-107 393.7 256 77.3
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.6e-107 393.3 254 77.6
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.1e-107 392.9 254 77.6
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 2.1e-107 392.9 254 77.6
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.7e-107 392.5 254 78.0
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 4.6e-107 391.7 254 78.0
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 6.1e-107 391.3 256 78.1
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 7.9e-107 391.0 256 77.0
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 3.3e-105 385.6 284 70.8
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.3e-105 385.6 254 75.6
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 3.3e-105 385.6 256 77.0
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 5.7e-105 384.8 254 76.4
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 7.4e-105 384.4 256 76.6
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.8e-104 382.5 254 76.4
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 3.7e-104 382.1 254 76.4
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.1e-103 380.6 254 73.6
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.1e-103 380.6 247 78.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.6e-102 375.9 254 76.8
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 7.7e-102 374.4 256 76.6
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 7.7e-102 374.4 256 73.0
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.7e-101 373.2 254 76.8
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.2e-101 372.9 254 75.2
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.2e-101 372.9 256 72.7
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 3.8e-101 372.1 253 73.1
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 6.5e-101 371.3 253 73.5
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 4.2e-100 368.6 254 72.4
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 3.0e-98 362.5 254 71.3
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 6.9e-95 351.3 236 75.4
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 3.4e-94 349.0 254 68.5
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 4.5e-94 348.6 230 78.3
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 5.9e-94 348.2 229 77.7
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.2e-93 346.3 254 68.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.2e-93 346.3 231 77.1
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.1e-92 344.0 254 70.9
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 2.1e-91 339.7 237 71.3
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 7.9e-91 337.8 228 75.4
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.8e-90 336.7 229 75.1
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 2.3e-90 336.3 217 79.7
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.3e-90 336.3 254 64.6
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 5.2e-90 335.1 218 78.4
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.5e-89 333.6 218 77.5
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.5e-89 333.6 261 67.8
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.0e-89 333.2 253 65.6
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 2.0e-89 333.2 253 65.6
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 3.7e-88 328.9 224 75.9
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 4.8e-88 328.6 214 78.5
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 5.3e-87 325.1 212 78.8
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 2.0e-86 323.2 258 67.8
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 8.5e-85 317.8 253 61.7
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 1.2e-83 313.9 254 66.1
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 4.7e-83 312.0 212 75.0
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.1e-79 297.7 189 81.5
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.6e-78 297.0 253 62.5
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 8.8e-74 281.2 191 75.4
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.6e-73 279.6 189 74.6
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 3.7e-72 275.8 187 75.4
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.1e-71 274.2 384 46.1
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.8e-57 224.6 158 72.8
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 4.9e-56 222.2 164 65.9
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 5.2e-50 202.2 147 70.7
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.5e-36 157.5 167 53.9
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.2e-31 138.3 69 100.0
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 3.2e-23 113.2 62 77.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.2e-17 94.7 149 40.9
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 5.8e-17 92.4 121 48.8
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 3.8e-16 89.7 41 95.1
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 5.4e-15 85.9 81 53.1
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 6.7e-13 79.0 44 75.0
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 4.3e-12 76.3 64 57.8
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 9.9e-09 65.1 51 64.7
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 6.4e-08 62.4 82 47.6
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 9.3e-07 58.5 26 96.2


User provided reference genes

Program Settings